Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7782 324 1e-83 >seq7782 Length=16676 Score = 324 bits (358), Expect = 1e-83 Identities = 1138/1752 (65%), Gaps = 44/1752 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 |||||||||||||| || |||| || | ||| | ||| ||||||||||||||| Sbjct 8089 TCGACCGTGAACTGAATGGCATCGGCCTTGGGGCGGGTGCGAAGGTAGTACATGCCGGTC 8030 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 ||||| || ||| | ||||| ||||| || | | | || | || | | Sbjct 8029 TTGAGCCCCTTCTTCCAGGAGTAGAAGTGCATGGAGGTGAGCTGGGCGGGCGTGGGGTTG 7970 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 |||| || || || | ||||| ||| |||||| || || || || |||||| Sbjct 7969 GCCAGGTGGATGTTGAGGGACTGGGACTGGCAGATGTAGGCGCCGCGGTCGGCCGCCATG 7910 Query 65258 TCAATGATACGACGTC--CCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 || |||| | || || ||| |||||||| ||||||||||| || | | | | ||| Sbjct 7909 TCGATGACGC-ACTTCTGCCGG-ATCTCCCACACGGTCTTGTAGAG-CTCCTTGAGCTCG 7853 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA-- 65372 || || | | || || || || ||||| | || || | || |||| Sbjct 7852 CGGGGGATGCTGGCCACGTTTTGCACGGAGCCACGGTTGCCCATGATCTGGTTGCGCACC 7793 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGAT-GTTGAACCAAGTGACGATTGATGACT 65431 ||| | | ||||| || ||||| || | | ||| | || || ||| |||| Sbjct 7792 TCGGCGTT--CCACAGCCCACGCTCGATCAGGTCGCTGAGC--AGGTAC--TTGTTGACG 7739 Query 65432 -TGG--AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 ||| ||||| || | || ||||| ||| || |||||||| || | ||| || | Sbjct 7738 ATGGTGAACTCACCCGCTAGCACACGTCGGGAGTACATGTTGGAGGTAAAGGGCTCGACT 7679 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 || || |||||||||| || || || || || || || |||||||| |||| || | Sbjct 7678 GACTCGTTGTTGCCTAGGATCTGCGCGGTGGAAGCGGTGGGCATGGGCGCGAGCAGGAGG 7619 Query 65549 GAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGT 65608 || || |||| |||| | | | ||| || | || ||||| ||| ||| Sbjct 7618 GAATTGCGCACGCCGTGCTCCTGGACCTTGGCGCGGAGGCCGGGCCAGTCCCAG--CGGG 7561 Query 65609 TTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAA 65668 | | | | || |||||| || ||| | | || | ||| || || Sbjct 7560 TGGAGGGGGTGA----CGCCCCACATGTCGAATTGGAAGACGCCCTTGCTGATGGGGGAG 7505 Query 65669 CCGAGGAAAC-TATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGC 65727 ||| | |||| | ||||| ||||||| | |||||| || | || || | || Sbjct 7504 CCG-GCAAACGTCTCGTAGGGGCCCTCCTTCATGGCAATTTCCATGGAGGCTTCCACGGC 7446 Query 65728 GGCAAAATAAATGGTCTCGAAAATG-CGTCGATTAAGTTCACGTGCCTCATCGCTCTCGT 65786 | | || || ||||||||||| ||| | | | || || | | || || |||| Sbjct 7445 GCCGAAGTACATGGTCTCGAAGATGTCCTTG-TTCAGCTGGTGCGCGTCCGGAGACTCGA 7387 Query 65787 ACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGAC 65846 | || | | |||| || || | || ||||| ||||| || ||||| |||||||| | Sbjct 7386 AGGGGAACCGCATCTTGATGAAGGCATCCGCCAGGCCTTGGACACCAATGCCGATGGGTC 7327 Query 65847 GATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 | || |||| |||||||| | ||||| ||||||||| | ||||| ||||| | || Sbjct 7326 GGTGGCGCATGTTGGAACGCTTGGCCTCCTCCACAGGGTAGAAGTTGATGTCGATGACGC 7267 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATA-CGT-----CGCAATTGTTCGAAATCAA 65960 | |||| ||||| |||||||| | ||| ||| ||| | ||| | | Sbjct 7266 GGTTCAGGTTGCGGGTCACCACCTTGGTGATCTCGTACAGACGCTGCAGGTCGTAGGTAG 7207 Query 65961 AATGTTTAGGACGAT--CGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGC 66018 || | || | | | || | || |||||| | ||| | || || Sbjct 7206 GGGCCTT--GCCGCTGCCCGAAGGCTCCTCCAGCACAAAGGCCGAGAGGTTGACCGAGGC 7149 Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078 ||||||||||| || | |||||| || ||||| ||||||| || || ||||| || || Sbjct 7148 AAGGTTGCAGACGGCCACCTCGTCGGGGGCGGTGTACTCGATGATCTCCGTGCAAAGGTT 7089 Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138 | | || |||| |||||| || || |||| | ||||| || ||||| | Sbjct 7088 GGAGGACTTGATCACCCCCAGATTCTGCTGGTTCGACTTGAGGTTGCAAGCGTCCTTAAA 7029 Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCG 66198 || |||||| || ||||| ||||| || ||||| || | | |||| ||| || | Sbjct 7028 CAGCATGTAGGGCGTGCCCGTCTCCACCTGGGAGTCCAACACGGCGAACCACAGCTGTTG 6969 Query 66199 TGCCTT---CACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTC 66255 ||||| |||| | ||| || || | || ||||| |||||||| || | Sbjct 6968 GGCCTTGATCACCTTGCGTGCCTTCCCGCTCTTC---TCGTACGACTCGTAGAGCTGCTT 6912 Query 66256 GAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCA 66315 ||| || || || || || | || | || |||| | || || | ||| ||||| Sbjct 6911 GAACTCCTCCCCGCACACGTCCGCCAAGCCGGGGCACTCATTGGGGCAAAACAGGGACCA 6852 Query 66316 ATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAG 66375 ||||| || | || || || |||| || | |||||| |||||||||| || || || Sbjct 6851 GTCACCGTCGTTCTCCACGCGCTGCATGAACAAATCAGGCGTCCAGAGGGCATAAAACAG 6792 Query 66376 ATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGAT 66435 || || ||||| | | ||| |||||||||| ||||||| ||| |||||||| ||||| Sbjct 6791 GTCACGGGCTCGCTCCAGCTCGTTGCCGTGATTCTTGCGCAGGTCAAGGAACTCGAAGAT 6732 Query 66436 GTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495 |||||| ||||| || || ||||| |||||||| |||||| | || || || || || || Sbjct 6731 GTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGAGCCCTTGCGCTTTCCCCCCCCCTG 6672 Query 66496 GTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTT 66555 ||| |||||||| || | |||||||||||||| ||| || |||| ||||| || | Sbjct 6671 GTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGATACCGTTGGAGGT 6612 Query 66556 GCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAAT 66615 || || | |||| |||| ||| | || || || || | ||| | || || || Sbjct 6611 ACCGTTCGAGCCGCGGATGTAGGAGTCACGGGCGCGGATGTTGTGGATGGACACGCCGAT 6552 Query 66616 ACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAAT 66675 || ||||| || |||||||| || || | | || | | ||||| || || Sbjct 6551 CCCGCCGGCGAATTTGGAGATGGCGGCGCATTGCTTGAGGGTGTCGTAGATGCCATCGAT 6492 Query 66676 GGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGC 66735 |||||| |||| ||||| |||||| |||| || || || || ||| ||| |||| Sbjct 6491 GGAGTCCTCCTTCATGGTGAGGAGGAAGCAGGAGGATAGCTGCGGGCGGGGGGTGCCGGC 6432 Query 66736 CGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTC 66795 ||| |||||||| || || ||||| ||| | | |||||| || || ||||| Sbjct 6431 GTTGAAAAGGGTGGGAGTGGCATGCGTGAAGAGCTTTTGGGACATGAGGTTATAGGTCTC 6372 Query 66796 GATGACAGCATC 66807 |||| | || || Sbjct 6371 GATGGCGGCGTC 6360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452724040240