Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq566 536 2e-147 seq288 378 9e-100 seq620 188 9e-43 seq49 158 2e-33 >seq566 Length=2184 Score = 536 bits (594), Expect = 2e-147 Identities = 737/1022 (72%), Gaps = 6/1022 (1%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 |||||| | | ||||||||| | ||||||||||| || || ||| | |||||||| || Sbjct 592 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGC 651 Query 190047 TTACTTCTTTTTCCC-ACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTT 190105 | || || ||||| || || | ||| ||| ||||||| ||| | || || ||||| || Sbjct 652 CT-TTTATTATTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTT 710 Query 190106 TGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTG-AGGGTGCTAATTTTC 190164 || |||| ||||| || || ||| | ||| | |||||| | ||| ||| || || Sbjct 711 TGTTACATCTTGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCT 769 Query 190165 TTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGG 190224 | || | || || ||||| ||||| | |||||||||||| | || || | |||| Sbjct 770 TAACTGTAGCGGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGG 829 Query 190225 GTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTG 190284 | |||||| | ||||| |||||| | ||| | ||| |||| ||| | ||||||||| Sbjct 830 GACCTGAAGCACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTA 889 Query 190285 TGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTT-CGTCAGTTTGAACTGGCA 190343 | || | || || || || | | ||||||||||| || || ||||| || || | || Sbjct 890 TCGCATTACATGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCT 948 Query 190344 CGTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTT 190403 ||||| | ||||| ||||| || || || ||||| |||||||| ||||| || || || Sbjct 949 CGTCTTGTAGGTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTC 1008 Query 190404 GTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTC 190463 ||| || || | ||||| ||||| || ||| | |||||||||||||| ||| || Sbjct 1009 GTTTCTGTATTCTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTT 1068 Query 190464 GGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTG 190523 || || ||||| || ||||||||| | | ||||| || || |||||||||||||| || Sbjct 1069 GGGGTTGCAGCTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTT 1128 Query 190524 AACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATC 190583 ||||| ||||| |||||||| || ||||| || | || || ||| || | || ||||| Sbjct 1129 AACCCATTCCATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATT 1188 Query 190584 CATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAA 190643 ||||| | |||||||| || || | | |||||||||||| |||||||| || Sbjct 1189 CATGGAGCTACTGTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGT 1248 Query 190644 GCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGG 190703 || || | |||||| ||||| || ||||| ||||| || || || | |||||| Sbjct 1249 GCGTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGG 1308 Query 190704 TCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTT 190763 |||||||| || ||||| || ||| ||| || | ||| | || ||||| ||| | ||| Sbjct 1309 TCTCAAATTTTCGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTT 1368 Query 190764 GTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT 190823 ||||| || | ||| | ||||| ||| | |||||| | ||| | || | || | Sbjct 1369 GTTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTA 1428 Query 190824 CGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACT 190883 | || || ||||| ||||| ||||| | | ||||| ||||||||||| || || ||| Sbjct 1429 AGAGCATACGACTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACT 1488 Query 190884 TTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGAT 190943 || ||||| |||||||| | || || |||||| || | |||||| |||| | || Sbjct 1489 TTCTACACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGAC 1548 Query 190944 CAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGA 191003 ||||| ||||| || |||||||| ||||| || || || ||| | || ||||| || | | Sbjct 1549 CAACCACATGAAAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 1608 Query 191004 TA 191005 || Sbjct 1609 TA 1610 >seq288 Length=849 Score = 378 bits (418), Expect = 9e-100 Identities = 410/541 (76%), Gaps = 6/541 (1%) Strand=Plus/Plus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACC 188937 |||||| | || |||||||||||||||| | |||||||| || | | | || || Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 188938 ATCTGCTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAA 188997 | |||||||||| |||| ||| |||||||||| || || || || || || ||||| ||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 188998 CCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCA 189057 || || ||||| ||||| | || ||||||||||||||| ||||||| ||| | ||| Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 189058 TCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGG 189117 || ||| | || ||| ||||||||||||| | |||||||| || || | || |||||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 189118 CTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC- 189176 || |||||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGG--TGTA-GCT 608 Query 189177 --CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC 189234 ||||||||| ||||| |||||||| |||||| | || |||||||||||||| | | Sbjct 609 TGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 668 Query 189235 ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGT 189294 | |||| ||| || || || || |||||||| ||||| || | || || || | || Sbjct 669 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGA 728 Query 189295 CAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTT 189354 |||||| |||||||| | ||||| || ||||| ||| || ||||||| |||| | Sbjct 729 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTA 788 Query 189355 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGT 189414 || ||||||||||| |||||||| || |||||||| ||||| ||| || || || ||| Sbjct 789 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 848 Query 189415 G 189415 | Sbjct 849 G 849 >seq620 Length=282 Score = 188 bits (208), Expect = 9e-43 Identities = 214/284 (75%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 189418 TTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGT 189477 || ||||| || | ||| || ||||| ||||| || || || ||| | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 189478 GAAACCACTGAA-ACCGAGTCCCAG--AACTATGGTTACAAGTTTGGACAAGAAGAAGAA 189534 ||||| |||| || | || | | ||||| |||||||| || ||||||||||||||| Sbjct 62 GAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 189535 ACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCG 189594 || ||||||||||| ||||| || || || || || ||| | ||||||||||| || Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 189595 TTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGG 189654 ||||||||||| ||| | | ||||||||| | ||||| |||||||| || ||||||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 189655 TTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGG 189698 || || || || || || || || |||||||||||| | ||||| Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 158 bits (174), Expect = 2e-33 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 189670 GTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGT 189729 || || || |||||||||||| | ||||| ||||||||||| ||||| || ||||| | Sbjct 2146 GTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGC 2087 Query 189730 CAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAA 189789 ||||| || || | ||||| ||||| ||| || |||||||||||| | | ||||||||| Sbjct 2086 CAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAA 2027 Query 189790 GTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGCAGCAGC-AGAGTCCAC 189848 || ||||| || |||||||| |||||||||||||| ||| | || | | | | || | Sbjct 2026 GTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATGTTC-T 1968 Query 189849 TCCTGTGGCACTCACCGCTCCCGC 189872 |||||| ||| | | |||||| || Sbjct 1967 TCCTGTTGCATTAAACGCTCCTGC 1944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633891432534000