Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq566 544 9e-150 seq288 450 2e-121 seq620 188 8e-43 seq49 136 4e-27 >seq566 Length=2184 Score = 544 bits (602), Expect = 9e-150 Identities = 730/1008 (72%), Gaps = 6/1008 (1%) Strand=Plus/Plus Query 163899 GACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 163958 || |||||| | ||||||||||| || || ||| | |||||||| || | || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCT-TTTATTATT 662 Query 163959 CCC-ACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTG 164017 ||| || || | ||||||| ||||||| ||| | || ||||| || |||||||| ||| Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 164018 GTACACCCACGGTCTCGCGTCTAGTTACCTTG-AGGGTGCTAATTTCCTTACAGCGGCTG 164076 ||| || || || | || ||| |||||| | ||| ||| || ||| | || | || | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGCGG 781 Query 164077 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 164136 | ||||| ||||| | |||||||||||| | || || | ||||| ||||| | | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 164137 AGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACG 164196 | || || |||| | | ||| ||| |||| ||| | ||||||||| | || || || | Sbjct 842 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATG 901 Query 164197 GATCTTTCGCTCTGATCGGTTTCATGCTT-CGGCAGTTTGAAATTGCACGTCTTGTAGGT 164255 | | || | | | || || ||| || || || || || || || || |||||||||||| Sbjct 902 GTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGT 960 Query 164256 ATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTC 164315 || ||||| || || || ||||| |||||||| || ||||| || || || || ||| Sbjct 961 ATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTC 1020 Query 164316 CTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCG 164375 | || || ||||| || ||| | ||||||||||| || || |||||||| || || Sbjct 1021 TTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCT 1080 Query 164376 ATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCAT 164435 || ||| | ||| | || ||| | ||||||||||||||||||||||| ||||| |||||| Sbjct 1081 ATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCAT 1140 Query 164436 ATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACC 164495 |||||||| || ||||| || | |||||||| | | | ||| |||||||| ||||| Sbjct 1141 ATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACT 1200 Query 164496 GTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCT 164555 ||||| || || | |||||||||||||| |||| || ||| || || || Sbjct 1201 GTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCA 1260 Query 164556 ACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTT 164615 || ||| ||||| ||||| || ||||| || || || | ||||||||||| ||||| Sbjct 1261 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTC 1320 Query 164616 GGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATG 164675 ||| | |||||| || || |||||| | |||||||| ||| | |||||||| || | Sbjct 1321 GGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACA 1380 Query 164676 GGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGAT 164735 || | |||||||||||| ||||||| | ||| | ||| | ||| | | || || || Sbjct 1381 GGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGAC 1440 Query 164736 TTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAG 164795 || || ||||| || || | ||||| || ||||| |||||||| || ||||| || || Sbjct 1441 TTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 1500 Query 164796 AACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAA 164855 || ||| | | || ||||| | | | |||||||| || |||||| ||||| ||| Sbjct 1501 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAA 1560 Query 164856 TCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 |||||||| |||||||| ||| | || | || ||||| || ||| Sbjct 1561 AACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 1608 >seq288 Length=849 Score = 450 bits (498), Expect = 2e-121 Identities = 444/574 (77%), Gaps = 0/574 (0%) Strand=Plus/Plus Query 160563 TGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTC 160622 ||||| | |||||| ||| | ||| ||| | || ||| | ||| ||||||||||| Sbjct 276 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 335 Query 160623 GGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTT 160682 ||||| | ||||||||||| | || |||| || |||||| || | || || | Sbjct 336 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATC 395 Query 160683 GCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTAT 160742 ||||| || || || || |||||||||||||||||||| |||||||| ||||| | || Sbjct 396 GCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATAC 455 Query 160743 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTC 160802 ||||||||||||||| ||||||||||| ||||| ||| ||| | || ||| |||||||| Sbjct 456 GGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTC 515 Query 160803 TACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAA 160862 ||||| ||||||||||||| ||| | || || ||||| ||||| ||||||||||||||| Sbjct 516 TACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 575 Query 160863 CTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTT 160922 || || ||||| |||||| | | || | ||||||||||| || || ||||||||| Sbjct 576 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 635 Query 160923 TCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCT 160982 |||||| | || ||||| || ||||| | ||| || | || || || || ||||| Sbjct 636 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 695 Query 160983 GCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCC 161042 || |||||||||| | || || || |||| |||||| ||||||||||||||||| Sbjct 696 GCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 755 Query 161043 CTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTG 161102 | ||||| |||||||| |||||||||||| | || ||||| |||||||||||||| || Sbjct 756 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 815 Query 161103 ATGCACCCCTTCCACATGTTGGGTGTTGCTGGTG 161136 |||||||| ||||| ||| ||||||||||||| Sbjct 816 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 188 bits (208), Expect = 8e-43 Identities = 214/284 (75%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 161139 TTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGT 161198 || ||||| ||| | ||| || ||||| ||||| || || || ||| | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 161199 GAAACCACTGAGAACGA-GTCCCAG--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAG 161255 ||||| ||| ||| || | | ||||| |||||||| || || ||||||||||| Sbjct 62 GAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 161256 ACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCC 161315 || ||||||||||| ||||| || |||||||| || || | |||||||||||||| Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 161316 TTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 161375 ||||||||||| ||| | || ||||||||| | || || ||||| ||||| ||||||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 161376 TTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGG 161419 || ||||| |||||||| || |||||||||||| | || || Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 136 bits (150), Expect = 4e-27 Identities = 153/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 161397 ACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGC 161456 || |||||||||||| | || || |||||||||||||| || | | ||| | || ||| Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 161457 AAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATG 161516 || | ||||| ||||||||| || | || |||||| | | ||||||||||||||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 161517 CACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA-GTCCACTCCTGT 161575 ||||| ||||| || |||||||||||||| ||| | || | || | || | |||||| Sbjct 2020 CACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATGTTC-TTCCTGT 1962 Query 161576 TGCACTGACCGCACCTACTGTT 161597 |||| | | ||| ||| ||||| Sbjct 1961 TGCATTAAACGCTCCTGCTGTT 1940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559161662844400