Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq4011 183 6e-44 seq870 78.8 2e-12 >seq4011 Length=2654 Score = 183 bits (202), Expect = 6e-44 Identities = 245/335 (73%), Gaps = 12/335 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCG-- 61 ||||| ||||| |||||| ||| |||||| || |||||||||| |||||||||| Sbjct 1554 CCCGACAAGGGGAGTGAAACAGATCCTGAAATCGGAAGCCTACAAGCAGTCGGAGCCGCC 1495 Query 62 -AGTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120 || | |||||||||||| ||||||| |||||| | | ||| || | || | ||| Sbjct 1494 AAGCG---CGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTCAT-GTGTCGAGC 1439 Query 121 GAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAG 180 || ||||| || ||| ||| || || ||||||||| || || |||||| || Sbjct 1438 AAGCTTAAGCCGTT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGCTAAG 1383 Query 181 TTGGTGGCGCTA-GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTA 239 || | | | ||| ||||||| |||||||| ||| ||||||| ||||| |||| Sbjct 1382 TTCGACGTATGACGACCCGAAACCAGGTGATCTATCCATGAGCAGGATGAAGGTTGGGTA 1323 Query 240 ACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAG 299 || | |||||| |||||||||| |||||||| |||||||||| | || ||| Sbjct 1322 ACACCAACTGGAGGTCCGAACCGGTGTCTGTTGAAAAAGACTCGGATGACTTGTGGATAG 1263 Query 300 GGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||||| ||| |||||| || Sbjct 1262 GGGTGAAAGGCCAATCAAACCTGGACATAGCTGGT 1228 >seq870 Length=38067 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/144 (72%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 194 ACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG---TCGCGGTAACGCGTGATGG 250 || |||||| |||||||| ||| || ||||||||| | || ||| ||| Sbjct 35969 ACCCGAAACTAAGTGATCTAACCATGAACAGGTTGAAAATTTGATGGAAACATTAATTGG 35910 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 |||||||||| || | |||||| | | | |||||| | | || |||||||||||||| Sbjct 35909 AGGACCGAACTCGTGTATGTTGAAGAATACTGGGATGATTTGTGGTTAGGGGTGAAAGGC 35850 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 ||||||||| || |||||| || Sbjct 35849 TAATCAAACTTAGATATAGCTGGT 35826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972743081472