Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4160 275 3e-71 >seq4160 Length=3530 Score = 275 bits (304), Expect = 3e-71 Identities = 237/295 (80%), Gaps = 20/295 (7%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 735 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATATATGCGAGTACAGGGGTGGCAAACC 794 Query 468 CGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGTGAGGGT 511 | | ||| ||||||||| || || |||||||| | | ||| Sbjct 795 CCCGTGCGCAATGAAAGTAAAGGGCTGCTTCTGCGGTCTGAGGTGGGATCTGTCAAAGGT 854 Query 512 GCACCATCGACCGATCCTGATGTCTTCGGATGGA---TTTGAGTAAGAGCATAGCTGTTG 568 |||||||||||||| | |||| |||||||||| | ||||||| |||||| ||||| Sbjct 855 GCACCATCGACCGACCATGAT-TCTTCGGATGAAAGGTTTGAGTGTGAGCATTTATGTTG 913 Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 914 GGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGCGAAGCCAGGGGAAACTCTGGTGGA 973 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| |||| || || |||||||||| ||||| ||||||||||||||||||| Sbjct 974 GGCTCGTAGCGATTGTGACGTGCAAATCCATCGTGGAATTTGGGTATAGGGGCGA 1028 Score = 183 bits (202), Expect = 1e-43 Identities = 139/164 (85%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||||||||||||||| |||||| |||||||| || |||| |||||||| | ||||| | Sbjct 330 TTCGACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGG 389 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||| || ||||||||||||| ||||||| |||| |||||||| |||| ||| Sbjct 390 CTAAATATCGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACT 449 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||||||||||| || | |||||||| ||||||||||| Sbjct 450 TTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAG 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079874496050