Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq4012 363 4e-98 seq4718 259 1e-66 seq870 192 2e-46 >seq4012 Length=1494 Score = 363 bits (402), Expect = 4e-98 Identities = 328/409 (80%), Gaps = 4/409 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| |||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 929 TACCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGC 870 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||||||||||||||||| | ||| |||||| | |||| |||| || Sbjct 869 TAGCGTTGCTCGGAATTACTGGGCGTAAAGGGAGCGTAGGCGGACATTTAAGTCAGGGGT 810 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||| ||||| ||||| |||||||| |||| |||| | || |||| || ||| Sbjct 809 GAAATCCCGGGGCTCAACCTCGGAATTGCCTTTGATACTGGGTGTCTTGAGTATGAGAGA 750 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| ||| |||||| ||||||| ||||||||| ||| |||||||| ||| Sbjct 749 GGTGTGTGGAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGG 690 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| | | |||| | ||||||||| | || |||||||||||||||||||||| Sbjct 689 CGAAGGCGACACACTGGCTCATTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACAG 630 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||||||||||||||||| |||||||| ||||||| | ||||| | | Sbjct 629 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGATTGCTAGTTG-TCGGGATGCA-T 572 Query 363 TCCTT--GGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || ||| ||| ||||||||| | ||| ||||||||||| ||| Sbjct 571 GCATTTCGGTGACGCAGCTAACGCATTAAGCAATCCGCCTGGGGAGTAC 523 >seq4718 Length=1216 Score = 259 bits (286), Expect = 1e-66 Identities = 296/397 (75%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 ||||| ||||||||| |||||||||||||||||||| ||| || |||||| |||| || Sbjct 651 AAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCAAGTGTTATCCG 710 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 || |||||||||||||||||| ||||| |||| | |||| | ||| ||||| || Sbjct 711 GATTTACTGGGCGTAAAGCGTCTGCAGGTGGTTTTCTAAGTCTACTGTTAAATCTTGAGG 770 Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAAT 194 || ||||| | |||| | | ||| | |||| |||| | || || | ||||| Sbjct 771 CTCAACCTCAAATCTGCAGTAGAAACTAGAAGACTTGAGTATAGTAGGGGTAGAGGGAAT 830 Query 195 TCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCC 254 | | ||| ||| ||||||||||||||||| | | ||||||| |||||||||||| | Sbjct 831 TTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATGGCGAAGGCACTCT 890 Query 255 CCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 314 ||||| || |||||| |||| |||||||| |||||||||| ||||||||||||| Sbjct 891 ACTGGGCTATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCC 950 Query 315 TGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG--GGATTTACTTCCTTGGTAA 372 ||||||| ||| |||||||| ||| | |||||| | || || | ||| Sbjct 951 CAGTAGTCCTAGCCGTAAACGATGGATACTCGATGTTGGACGTATCAACCCGTTCAGTAT 1010 Query 373 CGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | |||||||||||| |||| ||||||||||| ||| Sbjct 1011 CTTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 1047 >seq870 Length=38067 Score = 192 bits (212), Expect = 2e-46 Identities = 241/329 (73%), Gaps = 14/329 (4%) Strand=Plus/Minus Query 16 AGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGG 75 ||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| ||| Sbjct 24360 AGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCGAGCGTTATCCGG 24301 Query 76 AATTACTGGGCGTAAAGCGTGCGCAGGCGG----TTGTGTAAGACAGGTGTGAAATCCCC 131 ||| ||||||||||||| || || |||| | || ||| ||| || |||| Sbjct 24300 AATGACTGGGCGTAAAGGGTCCGTAGGCAGCATTTTTTGTTAGAG----GTTAAATAAAA 24245 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGAC---TGCACGACTAGAGTGTGTCAGAGGGGGG 188 ||||||| | || | || | | | | | | |||| || || | | Sbjct 24244 AAGCTTAACTTTT---TTCCGCTTCTAAAACGTAAATGCTTTGAGTTTGATAGGAGATAG 24188 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 ||||| ||| || || |||| || |||||||||||| ||||| |||| |||||||| Sbjct 24187 CAGAATTTCACATGGAGGGGTGATATCCGTAGATATGTGAAGGAATACCAGAGGCGAAGG 24128 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 | || || | || ||||||| | | | |||||||| |||||||||||||||||||| Sbjct 24127 CGGCTATCTAGATCAATACTGACGTTGAGGGACGAAAGCATGGGGAGCAAACAGGATTAG 24068 Query 309 ATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||| |||||||| ||| Sbjct 24067 ATACCCTGGTAGTCCATGCCCTAAAAGAT 24039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289524545504