Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq870 159 5e-37 seq4011 141 1e-31 seq4588 140 5e-31 >seq870 Length=38067 Score = 159 bits (176), Expect = 5e-37 Identities = 186/248 (75%), Gaps = 11/248 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||| || ||||||||||| |||||||| |||||||| ||||| | || ||| Sbjct 34921 CTTAATCTTGCAGCACCGGGCAGGTGTCAGTCCCTATACATCTTCTTAC-GAATTAGCAG 34979 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 |||||||||||||| |||||||||||| ||| | ||||| ||| | | | || | Sbjct 34980 AGACCTGTGTTTTTACTAAACAGTCGCTACCCCCGATTCTGTGCCAACTAAAAGAGATTT 35039 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | || ||| ||| ||||||||||||||||| | | ||||||||||| Sbjct 35040 CC-CTTTTTT-------AGT--CACTCCTTCTCCCGAAGTTACAGAGTCATTTTGCCGAG 35089 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| |||| | ||| | | ||||||||||| |||||| | |||||||||||||| Sbjct 35090 TTCCTTTACCATAATTCTTTCAAGCGCCTTAGTATACTCTACTCGTCCACCTGTGTCGGT 35149 Query 241 TTACGGTA 248 || | ||| Sbjct 35150 TTTCAGTA 35157 >seq4011 Length=2654 Score = 141 bits (156), Expect = 1e-31 Identities = 180/247 (73%), Gaps = 12/247 (5%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||| ||||||||||||||||| || ||||| ||| || | | ||||||| Sbjct 311 TTAACCTTCAGGCACCGGGCAGGCGTCAGACCCTATACGTCGCATTGCTG-CTTCGCAGA 369 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||||||| ||| || | ||| || || ||| Sbjct 370 GCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCTGGCTTGTGCCACTCAGTCCTGCT--- 426 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | | | | | ||| | || | ||||||||||| | || |||||||| | Sbjct 427 -------TGCGCAGGGTGAGTCACGC-TTATTCCGAAGTTACGCGTGCAATTTGCCGAGT 478 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | |||||||| | | |||||||| |||| ||||||||||||||||||||||||| Sbjct 479 TCCTTCAGCACAGTTCTCTCAAACGCCTTGGTATGCTCTACCTGACCACCTGTGTCGGTT 538 Query 242 TACGGTA 248 | |||| Sbjct 539 TCGGGTA 545 >seq4588 Length=1737 Score = 140 bits (154), Expect = 5e-31 Identities = 177/247 (72%), Gaps = 25/247 (10%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||||| ||||| | ||| || Sbjct 57 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTAC-GACTTAGCGGA 115 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||||||||||| |||||||||||||| || | ||| ||| Sbjct 116 GACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTGGTTATTGCAACC------------- 162 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || || | |||||||||||||||||||||||||||| |||||||||| | Sbjct 163 ----TCTTTAAA-------GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGT 211 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | ||||| | || | ||||||||| ||||||| | ||||||||||||| Sbjct 212 TCCTTAGAGAGAGTTCTCTCGCGCCCCTTAGTATACTCTACCCACCTACCTGTGTCGGTT 271 Query 242 TACGGTA 248 | |||| Sbjct 272 TCTGGTA 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694360640323