Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq870 102 9e-20 seq4588 96.9 4e-18 >seq870 Length=38067 Score = 102 bits (112), Expect = 9e-20 Identities = 131/180 (73%), Gaps = 7/180 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | || || || ||||||||||||||||| |||| | ||| |||| Sbjct 35151 AAACCGACACAGGTGGACGAGTAGAGTATACTAAGGCGCTTGAAAGAATTATGGTAAAGG 35092 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCA---GAAA----T 137 |||| |||||| |||| |||||||||||||| || | || ||| | |||| | Sbjct 35091 AACTCGGCAAAATGACTCTGTAACTTCGGGAGAAGGAGTGACTAAAAAAGGGAAATCTCT 35032 Query 138 GGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAAT 197 || ||| ||||| || || |||||||| ||||||||||| || ||| ||| Sbjct 35031 TTTAGTTGGCACAGAATCGGGGGTAGCGACTGTTTAGTAAAAACACAGGTCTCTGCTAAT 34972 >seq4588 Length=1737 Score = 96.9 bits (106), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 9/166 (5%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| |||| || |||||||||| || ||| ||| | | | |||| Sbjct 272 AAACCGACACAGGTAGGTGGGTAGAGTATACTAAGGGGCGCGAGAGAA-CTCTCTCTAAG 214 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| ||| |||| Sbjct 213 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCT----TTAAA---GAGG 161 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||| | ||||||| || |||||||| |||||||||||| || Sbjct 160 TTGCAATAACCAGGTCCAAGCGACTGTTTACCAAAAACACAGGTCT 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531169890754