Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq4011 91.5 1e-16 seq4588 84.2 2e-14 seq870 82.4 7e-14 >seq4011 Length=2654 Score = 91.5 bits (100), Expect = 1e-16 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| |||||| || | || |||||||||||| ||| Sbjct 395 GCGACTGTTTAGCAAAAACACAGGGCTCTGCGAAGCAGCAATGCGACGTATAGGGTCTGA 336 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||| ||||||||| Sbjct 335 CGCCTGCCCGGTGCCTGAAGGTTAA 311 >seq4588 Length=1737 Score = 84.2 bits (92), Expect = 2e-14 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| |||||||||| ||| || || || ||| || || Sbjct 152 ACCAGGTCCAAGCGACTGTTTACCAAAAACACAGGTCTCCGCTAAGTCGTAAGACGATGT 93 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| |||||||||||| ||||||||||||||| Sbjct 92 ATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 57 >seq870 Length=38067 Score = 82.4 bits (90), Expect = 7e-14 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| |||||| || || ||| || |||||||| ||| Sbjct 35006 GCGACTGTTTAGTAAAAACACAGGTCTCTGCTAATTCGTAAGAAGATGTATAGGGACTGA 34947 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||||||||| | ||| |||| Sbjct 34946 CACCTGCCCGGTGCTGCAAGATTAA 34922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476772974231