Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq4011 288 2e-75 seq870 239 1e-60 seq4588 129 1e-27 >seq4011 Length=2654 Score = 288 bits (318), Expect = 2e-75 Identities = 324/429 (76%), Gaps = 30/429 (7%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | |||||||||| | || ||||||||||||||| || | ||||||||| Sbjct 126 CGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGCCTGTGCTGGAGACAGT 185 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 GGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 245 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| ||||||||||||||||||| ||||||| || | ||| || Sbjct 246 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCTGGGCTTC-----AGTTCGACGCTTTC 300 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 | | | || | ||||||||| |||||||||||||||||| |||||||||||| || Sbjct 301 AC-ATCTCCCT---TTAACCTTCAGGCACCGGGCAGGCGTCAGACCCTATACGTCGCATT 356 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA-- 298 | || |||||| |||||||||| ||||||||||| | ||||| | | | | Sbjct 357 GCTGCTTCGCAGAGCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCTGGCTTGTGCCACT 416 Query 299 CCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTA 358 | | | | |||| || || || |||| ||| | ||||||||| Sbjct 417 CAGTCCT--GCTTGCGCAG--GGTGAGTCAC-------------GCTTATTCCGAAGTTA 459 Query 359 CG-GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 || ||| | |||||| ||||||||| | ||||||||||| ||||||||||| ||||| Sbjct 460 CGCGTG-CAATTTGCCGAGTTCCTTCAGCACAGTTCTCTCAAACGCCTTGGTATGCTCTA 518 Query 418 CCCAACCAC 426 || ||||| Sbjct 519 CCTGACCAC 527 >seq870 Length=38067 Score = 239 bits (264), Expect = 1e-60 Identities = 302/416 (73%), Gaps = 23/416 (6%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||| ||||| |||||||||||||||| | | ||| ||||||||| | ||| Sbjct 34747 CTGCATCTGCACAGATATTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCG 34806 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 34807 TTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGT 34866 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 190 | ||||| |||||||||||| ||| ||| | | ||| | | || |||| Sbjct 34867 CAGAGTTACAGCCGCCGTTTACTGGGACTTAGGTTTGAAGC----CAAAACCTCTCCCC- 34921 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 |||| ||| | |||||||||||| |||| |||||||| || ||| || || || Sbjct 34922 ----TTAATCTTGCAGCACCGGGCAGGTGTCAGTCCCTATACATCTTCTTACGAATTAGC 34977 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCT 310 |||| ||||||||||| ||||||||||| | || | | | | | | | ||| | Sbjct 34978 AGAGACCTGTGTTTTTACTAAACAGTCGCTACCCCCGATTCTGTGCCAACTAAAAGAGAT 35037 Query 311 TACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTT 370 | | |||| | | | | ||||||||||||||||| | | | |||| Sbjct 35038 TTC---------CCTT-----TTTTAGTCACTCCTTCTCCCGAAGTTACAGAGTCATTTT 35083 Query 371 GCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||| |||||||| || | |||| ||||||||||| |||| |||||| | |||| Sbjct 35084 GCCGAGTTCCTTTACCATAATTCTTTCAAGCGCCTTAGTATACTCTACTCGTCCAC 35139 >seq4588 Length=1737 Score = 129 bits (142), Expect = 1e-27 Identities = 199/284 (70%), Gaps = 30/284 (11%) Strand=Plus/Plus Query 139 CGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACC-CCATCAATTA 197 ||||||||||| ||||||||||| | | ||||| || | || |||| | || ||| Sbjct 1 CGGCCGCCGTTCACCGGGGCTTCAGTAATTAGCTTTGCTTACGCGAACCAACGTC-TTTA 59 Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 |||||||||||| |||||||||||| ||| |||| || ||| || || || ||| | Sbjct 60 ACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGCGGAGACC 119 Query 258 TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAG 317 ||||||||| ||||||||||| | |||||| | || | Sbjct 120 TGTGTTTTTGGTAAACAGTCGCTTGGACCTGGT-TATT---------------------G 157 Query 318 CAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGT 377 ||| ||| | | | ||| | ||||||||||||||||||| || ||||||| ||| Sbjct 158 CAA--CCT----CTTTAAAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGT 211 Query 378 TCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCA 421 ||||| |||||||||| || |||| |||| ||||||||| Sbjct 212 TCCTTAGAGAGAGTTCTCTCGCGCCCCTTAGTATACTCTACCCA 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260726230592