Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq4011 282 9e-74 seq870 280 3e-73 seq4588 201 2e-49 >seq4011 Length=2654 Score = 282 bits (312), Expect = 9e-74 Identities = 289/375 (77%), Gaps = 23/375 (6%) Strand=Plus/Plus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||||| ||| || | | ||||||||| || Sbjct 133 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGCCTGTGCTGGAGACAGTGGGGAAG 192 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 193 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 252 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||||||||||||||||||||||||| |||||| || ||||| ||| | ||| Sbjct 253 CGTTATAGTTACGGCCGCCGTTTACCTGGGCTTCAG--------TTCGA-CGCTTTCACA 303 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 |||| ||||||||| |||||||||||||||||| ||||||| ||| |||| ||| Sbjct 304 TCTCCCTTTAACCTTCAGGCACCGGGCAGGCGTCAGACCCTATACGTCGCATTGCTGCTT 363 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTC-----------GCTTGGGCCTATTCTCTGC 290 ||||| |||||||||||| ||||||||| ||||| ||| | || | | Sbjct 364 CGCAGAGCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCTGGCTTGTGCC-ACTCAGTCC 422 Query 291 GGCCTG-TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCC 349 || || || | || || | ||| | || |||||||| | || ||||||||||||| Sbjct 423 TGCTTGCGCAGGGTGAGTCA-CGCTTATTCCGAAGTTACGCGTGCAATTTGCCGAGTTCC 481 Query 350 TTAACAATAGTTCTC 364 || | | ||||||| Sbjct 482 TTCAGCACAGTTCTC 496 >seq870 Length=38067 Score = 280 bits (310), Expect = 3e-73 Identities = 282/368 (77%), Gaps = 20/368 (5%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||| ||| | ||| ||||||||| || | ||| || ||||||| | || ||||| Sbjct 34749 GCATCTGCACAGATATTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCGTT 34808 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 34809 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTCA 34868 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||| |||||||||||||||| |||| ||| || || ||| ||| Sbjct 34869 GAGTTACAGCCGCCGTTTACTGGGACTTAGGTT---TG------AAGCCAAAACCTCTCC 34919 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||||| ||| |||||||||||||| ||||| |||||||||| |||| ||| ||||||| Sbjct 34920 CCTTAATCTTGCAGCACCGGGCAGGTGTCAGTCCCTATACATCTTCTTACGAATTAGCAG 34979 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGA--- 303 | |||||||||||| |||||||||||| || ||||| ||| || | ||| Sbjct 34980 AGACCTGTGTTTTTACTAAACAGTCGCTACCCCCGATTCTGTGCCAACTAAAAGAGATTT 35039 Query 304 --------CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355 || ||| ||||||||| ||||||| | |||||||||||||||||||| || Sbjct 35040 CCCTTTTTTAGTCACTCCTTCTCCCGAAGTTACAGAGTCATTTTGCCGAGTTCCTTTACC 35099 Query 356 ATAGTTCT 363 ||| |||| Sbjct 35100 ATAATTCT 35107 >seq4588 Length=1737 Score = 201 bits (222), Expect = 2e-49 Identities = 184/232 (79%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 133 CGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAA 192 ||||||||||| || ||||||| ||| |||| | || | | ||| | | |||| Sbjct 1 CGGCCGCCGTTCACCGGGGCTTCAGTAATTAGCTTTGCTTACGCGAACCAACGTCTTTAA 60 Query 193 CCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCT 252 |||||| |||| |||||||||||||| || |||||||||||| ||||||||| || |||| Sbjct 61 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGCGGAGACCT 120 Query 253 GTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGGCACCC 312 ||||||||||||||||||||||||| ||| | ||| ||| | | |||||||| Sbjct 121 GTGTTTTTGGTAAACAGTCGCTTGGACCTGGTTATTGCAACCT---CTTTAAAGGCACCC 177 Query 313 CTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||| ||||||||||| |||||||||||||||||| | ||||||| Sbjct 178 CTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTCTC 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062337838976