Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq4012 462 7e-128 seq870 250 7e-64 seq4718 141 3e-31 >seq4012 Length=1494 Score = 462 bits (512), Expect = 7e-128 Identities = 400/497 (80%), Gaps = 24/497 (5%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 525 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 466 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCT- 119 ||||||||||||||||||||||| |||||||||||| ||||||| | ||| | Sbjct 465 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGCGTTTGACATGTCCGGACGATTT 406 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 | |||||| || | | |||||||||| || | ||||||| ||||||| |||||||| Sbjct 405 CCAGAGATGGATCTCTTCCCTTCGGGG-ACTGGAACACAGGTGCTGCATGGCTGTCGTCA 347 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 346 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGCCATTAGTTG 287 Query 240 CCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 |||||||| ||||||| ||||||| ||||||||||| || ||||||||||||||||| Sbjct 286 CCATCATTCAGTTGGGAACTCTAATGGGACTGCCGGTGCTAAGCCGGAGGAAGGTGGGGA 227 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 |||||||| || ||||| |||||| |||||||||||||||||||||||| | || Sbjct 226 TGACGTCAAGTCCTCATGGCCCTTACAGGGTGGGCTACACACGTGCTACAATGGCGACTA 167 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 || ||| | ||||| ||||| | |||||||||||||| Sbjct 166 CAGAGG---------------------GTTAATCCTTAAAAGTCG-TCTCAGTTCGGATT 129 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTA 479 || |||||||||||| |||||| |||||||||||||||||| ||||||||||| Sbjct 128 GTCCTCTGCAACTCGAGGGCATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCG 69 Query 480 CGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 68 CGGTGAATACGTTCCCG 52 >seq870 Length=38067 Score = 250 bits (276), Expect = 7e-64 Identities = 362/505 (72%), Gaps = 32/505 (6%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||| Sbjct 23975 TACGACCGCAAGGTTGGAACTCAAAGGAATTGACGGGGGCCTATACAAGTGGTGGAGCAT 23916 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||| ||| ||||| |||||||||| ||||||||| Sbjct 23915 GTGGTTTAATGCGACAATACGCGCGAAACCTTACCAGTTCTTGACAT-----------AA 23867 Query 121 TAGAGATAGAGGTT-----TCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTC 175 | ||| | || || | || | | | | ||||||| ||||||| |||| Sbjct 23866 AAAAGAAAAAGTTTGAAAGGACAATT--TTGAAGATTTTTACAGGTGCTGCATGGCTGTC 23809 Query 176 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCC-CGCAACGAGCGCAACCCTTAAGCTT 234 ||||||||||||||||||||||| |||||| ||| |||| ||| ||||| | ||| Sbjct 23808 GTCAGCTCGTGTCGTGAGATGTTAGGTTAACTCCTTTTAACGGGCGAAACCCCTTTTCTT 23749 Query 235 AGTTGCCA-TCA---TTAAGTT--GGGCACTCTAAGTTGACTGC----CGGTGACAAACC 284 |||||||| | | |||| || ||||||||| ||| || | || Sbjct 23748 AGTTGCCACTTAAATTTAATTTTAAAGCACTCTAAAAAGACAGCTCCTTTTTTTTAATTT 23689 Query 285 G--GAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACG 342 | |||||||||||||| |||||||| || | ||| ||||||||| ||||||||||||| Sbjct 23688 GGAGAGGAAGGTGGGGATGACGTCAAGTCCTTATGGCCCTTATGAACTGGGCTACACACG 23629 Query 343 TGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGT 402 ||||||||||| || |||| | | ||| | | | | ||| ||| | ||| | Sbjct 23628 TGCTACAATGGTAAAGACAATGAGAAGCAATAGGGTAACCCGGAGCCAAT-CTTCAAACT 23570 Query 403 TGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAAT 462 | | |||||| ||||| | |||||||||| | | |||||| ||||||| |||||||| Sbjct 23569 TTACCAAAGTTCGAATTGTGGACTGCAACTCGTCCACATGAAGGTGGAATCACTAGTAAT 23510 Query 463 CGTAGATCAGCATGCTACGGTGAAT 487 || | ||||||||| | |||||||| Sbjct 23509 CGCACATCAGCATGTTGCGGTGAAT 23485 >seq4718 Length=1216 Score = 141 bits (156), Expect = 3e-31 Identities = 89/96 (93%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| |||||||||||||||||| || Sbjct 1045 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGGAT 1104 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCA 96 |||||||||||||| ||||||||||||||||||||| Sbjct 1105 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCA 1140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503912000960