Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq4833 217 3e-54
seq870 107 4e-21
>seq4833
Length=1120
Score = 217 bits (240), Expect = 3e-54
Identities = 185/228 (81%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171
||||| | ||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 212 GGACACTCCCAGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCG 271
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231
| ||||| | |||||| | |||| |||| | || | |||| |||||||||||| |
Sbjct 272 CACAAAGGTTTCCTCAGATCGGATAGAAATCGATCGAAGAGTGTAAAGGCAAAAGGAAGC 331
Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291
|||||||||| || |||||| ||||| |||||||||||| |||| ||||||| || |
Sbjct 332 TTGACTGCGAGACGTACAAGTCAAGCAGAGACGAAAGTCGGTCTTAGTGATCCGACGATC 391
Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||| ||||| || |||||||| ||||||||||| ||| || ||||||
Sbjct 392 CTGAGTGGAAAGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 439
>seq870
Length=38067
Score = 107 bits (118), Expect = 4e-21
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCA-AAGATACCC 184
||| ||||||||||||||||| ||||| ||| ||||||||||| | ||| || |
Sbjct 34588 GGGTAGTTTGACTGGGGCGGTGACCTCCTAAAAAGTAACGGAGGTATTTATAAGGTAGGC 34529
Query 185 TCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244
||| || | | || || | | | |||| || |||| ||| || ||||||| | |
Sbjct 34528 TCA--TTAGGT-TAATCCCTAAGTAGAGTGTAATGGCATAAGCCTGCTTGACTGTAAGAT 34472
Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304
||| || ||||| |||||||| | | || |||||||| ||| ||| ||||| |
Sbjct 34471 TGACAAATCGAGCAGAAACGAAAGTTGAACATAGTGATCCGGTGGTTCTGTGTGGAAAGA 34412
Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| |||||| | ||||||||| ||| || ||||||
Sbjct 34411 CCATCGCTCAATGGATAAAAGGTACGCTAGGGATA 34377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982342519776
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |