Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq4011 136 4e-30 seq870 132 5e-29 >seq4011 Length=2654 Score = 136 bits (150), Expect = 4e-30 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||||| | | |||||||||| | | | ||||||||||||| Sbjct 109 GGGTCTTTCCGTCTGACCGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTGAG 168 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 169 CCTGTGCTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 228 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 229 CAAGGAATTTCGCTACCTTAGGACCGTTA 257 >seq870 Length=38067 Score = 132 bits (146), Expect = 5e-29 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||||||| |||||| ||| |||| | |||||||||||| Sbjct 34720 GGGTCTTTCCGTCTAGCTGTAGGTAATCTGCATCTGCACAGATATTTCAATTTCACTGAA 34779 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | ||| ||||||| |||||||||| ||||||||||||||||||||| Sbjct 34780 TTTATGGTAGAGACAGCGGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGA 34839 Query 145 CAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||| ||||||| Sbjct 34840 CAAGGAATTTCGCTACCTTTGGACCGT 34866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547168983849