Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq4011 343 5e-92 seq4588 248 3e-63 seq870 114 5e-23 >seq4011 Length=2654 Score = 343 bits (380), Expect = 5e-92 Identities = 416/557 (75%), Gaps = 31/557 (6%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAA-GCTTGTGGGCCCCCTAGACCATCCAGTGCT 111 || ||||||||||||||| | | |||| ||| | | ||| | ||||||||||||| Sbjct 1117 GGTATTCGGAGTTTGGTTAGTATTGGTACCGCTCGCGCAGCCCGCA-ACCATCCAGTGCT 1175 Query 112 CTACCTCCGGGAAGAAACACGC--GACGCTGCACCTAAATGCATTTCGGGGAGAACCAGC 169 ||||| || ||| || || |||||| |||||||| |||||| ||||||||||| Sbjct 1176 CTACCCCCC--AAGGAATTCGTCGGACGCTCTACCTAAATAGATTTCGCGGAGAACCAGC 1233 Query 170 TATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC 229 ||| | | ||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1234 TATGTCCAGGTTTGATTGGCCTTTCACCCCTATCCACAAGTCATCCGAGTCTTTTTCAAC 1293 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 | ||||||| |||||| ||| |||||| ||||| ||||| ||||||||||| Sbjct 1294 AGACACCGGTTCGGACCTCCAGTTGGTGTTACCCAACCTTCATCCTGCTCATGGATAGAT 1353 Query 290 CACTTCGCTTCGGGTCTTGAT-CGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 ||| | | |||||||| | || ||| ||| | |||||||||| |||||||||||||| Sbjct 1354 CACCTGGTTTCGGGTCGTCATACGTCGAACTTAG-CGCCCTATTCAGACTCGCTTTCGCT 1412 Query 349 ACGGCTACCCCACACGGGTTAACCTCGC--GACACAACGCAAACTCGCAGGCTCATTCTT 406 || |||| || |||| |||| || || |||||| || |||| | | |||| | Sbjct 1413 GCGCCTACACCTAACGGCTTAAGCTTGCTCGACACATG---AAGTCGCTGACCCATTATA 1469 Query 407 CAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTT--CAGCTCCGACGGATTGTAGG 464 ||||||| ||||||||||| || ||| | |||||||| | ||||||| Sbjct 1470 CAAAAGGTACGCCGTCACC-------------GCGCTTGGCGGCTCCGACTGCTTGTAGG 1516 Query 465 CACATGGTTTCAGGTACTATTTCACTCCCC--GCCAGGGGTACTTTTCACCTTTCCCTCA 522 | | ||||||| || ||||||||||| | | ||||| |||||||||||||||||| Sbjct 1517 CTTCCGATTTCAGGATCTGTTTCACTCCCCTTGTC-GGGGTGCTTTTCACCTTTCCCTCA 1575 Query 523 CGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAG 582 |||||||||| | ||||||||| ||||||| |||||||| |||||||||| ||| Sbjct 1576 CGGTACTTGTTCACTATCGGTCGTAGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCAT 1635 Query 583 ATTCACACGAAATTTCA 599 |||| || |||||| Sbjct 1636 GTTCAGACAGGATTTCA 1652 >seq4588 Length=1737 Score = 248 bits (274), Expect = 3e-63 Identities = 342/469 (73%), Gaps = 21/469 (4%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| |||||| ||||||||||||||||||||| | | || ||||||| ||||| Sbjct 1047 CGCTGCGCCTAAACACATTTCGGGGAGAACCAGCTAGCTCCGGATTCGATTGGCATTTCA 1106 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| || | |||||||| | ||| |||||| ||||||| | Sbjct 1107 CCCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCAGTTCGGACCTCCACTTAG 1166 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCG--T 313 | ||||| |||||| |||| ||||| ||||||| | ||||||||| | | | Sbjct 1167 TTTTACCTAAGCTTCATCCTGGTCATGGTTAGATCATCCGGGTTCGGGTCTGTACCTAAT 1226 Query 314 GCCACTCATACGCCCTAT-TCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACC 372 | || | |||| | | || ||||||||| ||| |||| | | | |||||| Sbjct 1227 GACATT---ACGCTCGTTATCAAGCTCGCTTTCACTATGGCTTCGT-ATTC---TTAACC 1279 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA--CCTGGTA 430 || | | ||| |||| |||||||||||||| |||||||| || | | || | Sbjct 1280 CAGCCATTAGATACAAG-TCGCCGGCTCATTCTTCAACAGGCACGCAGTTAGGCTTGACA 1338 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 || || | |||| ||| | |||||||| |||||||| || || ||||||| Sbjct 1339 ACTCGTAGCC-CTTCTGCTGC------TTGTAGGCTTTTGGTTTCATGTTCT-TTTCACT 1390 Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550 |||| || ||||| ||||||||||||||||||||||||| || | |||||||||| || Sbjct 1391 CCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAG 1450 Query 551 GAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || ||||||| ||| |||||||| | |||||||||| ||||||| Sbjct 1451 GAATATTTAGCCTTGCAAGGTGGTCCTTGCGGATTCACACGGAATTTCA 1499 >seq870 Length=38067 Score = 114 bits (126), Expect = 5e-23 Identities = 127/169 (75%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 || ||||| |||||| ||| |||||||||| | |||||||||| |||||||||||||| Sbjct 35804 ACTTAAATAGATTTCGCGGAAAACCAGCTATATCTAAGTTTGATTAGCCTTTCACCCCTA 35863 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 ||||| ||||||| | | |||||| || | ||||||||||||| | || | Sbjct 35864 ACCACAAATCATCCCAGTATTCTTCAACATACACGAGTTCGGTCCTCCAATTAATGTTTC 35923 Query 262 CCGC---GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTT 307 | | ||||||||| ||||| |||||||||| | ||||||| || Sbjct 35924 CATCAAATTTTCAACCTGTTCATGGTTAGATCACTTAGTTTCGGGTTTT 35972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817493652224