Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq4011 307 3e-81 seq4588 208 2e-51 >seq4011 Length=2654 Score = 307 bits (340), Expect = 3e-81 Identities = 326/418 (78%), Gaps = 10/418 (2%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| | | |||||||||| | |||||||| ||||||||| | Sbjct 1262 CCTATCCACAAGTCATCCGAGT--CTTTTTCAACAGACACCGGTTCGGACCTCCAGTTGG 1319 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||||||| || ||||| ||| ||||||||| || ||||| |||||| | Sbjct 1320 T-GTTACCCAACCTT-CATCCTGCTCAT-GGATAGATCACCTGGTTT-CGGGTCGTCATA 1375 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAA 182 | ||| ||||||| | ||||||||||| |||| ||||| | |||| | |||| Sbjct 1376 CGTCGAACTTAGCGCCCTATTCAGACTCGCTTT-CGCTGCGCCTACACCTAACGGCTTAA 1434 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 |||| || | | ||||||||||||||||||||||||||||||| |||||| | Sbjct 1435 GCTT-GCTCGACACATGAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCGCGCT 1493 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 | || |||| |||||||||| || | || ||||||||||| |||||||||||| || Sbjct 1494 TGGCGG-CTCCGACTGCTTGTAGGCTTCCGATTTCAGGATCTGTTTCACTCCCCTTGTCG 1552 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||| |||||| |||||||||||||||||| |||||||||||||| || |||| ||| Sbjct 1553 GGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCGTAGAGGAGTACTTA 1612 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | |||||||| |||||||||||| |||||||| |||| |||| ||| |||||||| Sbjct 1613 GGCTTGGAGGGTGGTCCCCCCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCG 1670 >seq4588 Length=1737 Score = 208 bits (230), Expect = 2e-51 Identities = 311/419 (74%), Gaps = 22/419 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| |||| |||||| |||||| ||||| || Sbjct 1114 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCAGTTCGGACCTCCACTTAGTT-TT 1170 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| || |||| ||| || |||||| |||| || ||||||| | || | Sbjct 1171 ACCTAAGCTT-CATCCTGGTCAT-GGTTAGATCATCCGGGTT-CGGGTCTGTA-CCTAAT 1226 Query 129 GACTAGACGCCC--TAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT 186 ||| |||| | || ||| |||||||| | ||| | || | ||||| |||| | Sbjct 1227 GACATTACGCTCGTTATCAAG-CTCGCTTT-CACTATGGCTTCG-TATTC--TTAACCCA 1281 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAA 244 |||| | | | ||||||| | | |||| | ||| ||| ||||||| | | |||| Sbjct 1282 -GCCATTAGATACAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTTAGGCTTGACAAC 1340 Query 245 --GTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 || | | | | ||||||||| || | ||||||| | ||| ||||||||||||| || Sbjct 1341 TCGTAGCCCTTCTGCTGCTTGTAGGCTTTTGGTTTCATGTTCT-TTTCACTCCCCTC-CC 1398 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| |||||||||||||||||| ||||||||||||||| |||| | ||||| Sbjct 1399 GGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAGGAATATTT 1458 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| | | |||||| | ||||| || | |||| |||||||| | ||||||| Sbjct 1459 AGCCTTGCAAGGTGGTCCTTGCGGATTCACACGGAATTTCACGTGCTCCATGCTACTCG 1517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241527353984