Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq4012 226 6e-57 seq4718 187 5e-45 seq870 127 4e-27 >seq4012 Length=1494 Score = 226 bits (250), Expect = 6e-57 Identities = 236/307 (77%), Gaps = 17/307 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||||| ||||| |||| ||||||| |||| || ||||||||||||||||||||| Sbjct 989 GGCATGGCTGCGTCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAG 1048 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||||||||||||||||||||||||| | ||| |||||||| || ||||| ||| Sbjct 1049 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 1108 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||||| | |||| ||||||||| |||||| | |||| ||| || Sbjct 1109 CGTCGCCTTGGTGGTCCATTACACCACCAACTAGCTAATCAGACGCGGGCCGCTCCAATG 1168 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||||||||||||| | ||| | || || || |||||||||| Sbjct 1169 GCGATAAATCTTT--CCCCCGAAGG--GC---------AC---ATACGGTATTAGCTCAA 1212 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| |||||||| | || |||| ||| | |||||||||||||||||||||| Sbjct 1213 GTTTCCCTGAGTTATTCCGTACCAAAGGGCACGTT-CCCACGTGTTACTCACCCGTCCGC 1271 Query 301 CACTAAG 307 ||||||| Sbjct 1272 CACTAAG 1278 >seq4718 Length=1216 Score = 187 bits (206), Expect = 5e-45 Identities = 228/309 (74%), Gaps = 23/309 (7%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| || || || |||||||||||||||||||||||||| ||| Sbjct 562 TCAGGCTTTCGCCCATTGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCG 503 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||| ||| |||||| | || |||||||| || ||||| |||||||| |||||| Sbjct 502 TGTCTCAGTTCCAGTGTGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 443 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTT---TCAGCGATAAAT 189 ||| ||| | |||||||| |||||| ||||||||| |||| ||| | ||| Sbjct 442 AGGCCTTTACCCTACCAACTAGCTAATCAGCCGCGAGCTTCTCTTCAGGCAGAGGTAA-- 385 Query 190 CTTTGGTCAAAGAATGA-TGCCATCCTCT-----------GACATTATGCGGTATTAGCG 237 ||| || || | | |||||| || |||| ||| |||||| Sbjct 384 ---GAGTC--AGTATTACTTATCTCCTCTGTTTCACCCAGGAGCATATGGGGTTTTAGCG 330 Query 238 TTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTC 297 ||||||| |||||| || ||| |||||| | | ||||||||||||||||||||| Sbjct 329 AATGTTTCCATCCGTTATCCCCCTCCTAAAGGC-GAATTCTCACGTGTTACTCACCCGTC 271 Query 298 CGCCACTAA 306 ||||||||| Sbjct 270 CGCCACTAA 262 >seq870 Length=38067 Score = 127 bits (140), Expect = 4e-27 Identities = 139/184 (76%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | |||| | |||||| ||| || || |||||||| |||| | || || Sbjct 24439 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCTCACTGCTGGCTCCAAATGAAGCCT 24498 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||||||||| |||||| || ||||||||||| | |||| |||| | || Sbjct 24499 GGGCCTTGTCTCAGTCCCAGTGTGGCTGTACAACCTCTCAGAACAGCTAAGGATCATAGG 24558 Query 127 CTTGGTGGGCTATTATC---TCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCG 183 |||||| ||| ||| | ||||||||||||||| | | || ||||||| |||| Sbjct 24559 CTTGGTAGGCCTTTACCCAAATACCAACTACCTAATCCTACACAGGCTCATCTTTTAGCG 24618 Query 184 ATAA 187 | || Sbjct 24619 AAAA 24622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998341583616