Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq4588 230 5e-58 seq4011 228 2e-57 >seq4588 Length=1737 Score = 230 bits (254), Expect = 5e-58 Identities = 302/407 (74%), Gaps = 11/407 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| || |||| |||| || ||| | | | | Sbjct 499 CGACTACGCCTCTCGGCCTCGCCTTAGGTCCTGACTAACCCTTCGCGGACGAGCCTTCCG 558 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||| | | |||| | | |||||| |||| | ||||||||| ||| Sbjct 559 AAGGAATCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGCTACTCAAGCCG 618 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC--ACTGACAC 177 |||||||||| | |||| | | | || | | | |||||| |||| || Sbjct 619 ACATTCTCACTTCTGTTTCGTCCAACTC-CGCTCTCGCTAAATCTTCACTCTACTG-CAG 676 Query 178 GACGCTCCCCTACCCA--AC-CACACAGGT-TGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | || | | || | | |||| |||||||| ||| ||||| | | Sbjct 677 AACGCTCCCCTACCGATAACTCTTAAAGCTATCCCACGGCTTCGGCAGATGACTTA-GTC 735 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 |||||| ||| ||||||| || || |||||||||||||||||||||||||||||||| Sbjct 736 CCGCTA-ATTTTCGGCGCAAGATTGCTCGACCAGTGAGCTATTACGCACTCTTTCAAGGA 794 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 | |||||||| |||| |||||||||||||| | || |||| |||||| |||| || Sbjct 795 TTGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCAGCCTTCCCACTTCCTTTGTCACTTAG 854 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || || ||||||||||| | || |||||||||||||||||||| Sbjct 855 CCATCATTTTGGGGCCTTAGCCGGTGGTCTGGGCTGTTTCCCTCTCG 901 >seq4011 Length=2654 Score = 228 bits (252), Expect = 2e-57 Identities = 295/406 (73%), Gaps = 15/406 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| | ||||| | ||| || Sbjct 665 CGACTACGCTTTTCAGCCTCGCCTTAGGGGCCGACTAACCCTGCGCAGATTAGCTTTACG 724 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | ||||||||||| ||||||| | | || ||| | | || |||||||| | | Sbjct 725 CAGGAACCCTTGGTCTTTCGGCGGGAGTGTCTCTCACACTCCTATCGTTACTCATGTCAG 784 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||||||||| | | ||||| | || |||| | | ||||||| | || | Sbjct 785 CATTCTCACTTCCGATACCTCCAGC-CAGGCTCACGCCTGACCTTCACCGGCCTACGGAA 843 Query 180 CGCTCCCCTACCC---------AACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 |||||| ||||| ||| || | ||| | |||||||| | ||| | Sbjct 844 CGCTCCGCTACCGCTTGCAGTAAACTGCAAAC----CCATATCTTCGGCGAACGGCTTGA 899 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| |||||| || |||| | ||| ||||| ||||||||| |||||| ||||| || Sbjct 900 GCCCCGTTACATTTTCCGCGCAGGATCGCTTGATCAGTGAGCTGTTACGCTTTCTTTAAA 959 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 ||||||||||||| |||||||||||||| ||||| | |||| ||||||| ||||||||| Sbjct 960 GGATGGCTGCTTCTAAGCCAACCTCCTGATTGTCAAAGCAATCCCACATCGTTTCCCACT 1019 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 || | |||| |||||||||| ||||| | ||| ||||||||| Sbjct 1020 TAGCCGTTACTTGGGGGCCTTAGATGATGGTTAGGGTTGTTTCCCT 1065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177531098624