Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq4012 104 2e-20 seq870 93.3 4e-17 >seq4012 Length=1494 Score = 104 bits (114), Expect = 2e-20 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 70 CCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTT 129 ||||||||| |||||||| ||||||| ||||| || |||||||||||||||||| Sbjct 160 CCCTCTGTAGTCGCCATTGTAGCACGTGTGTAGCCCACCCTGTAAGGGCCATGAGGACTT 219 Query 130 GACGTCATCCCCACCTTCCTCCGGTTT 156 |||||||||||||||||||||||| || Sbjct 220 GACGTCATCCCCACCTTCCTCCGGCTT 246 >seq870 Length=38067 Score = 93.3 bits (102), Expect = 4e-17 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 ||| | |||||||||| ||||||| ||||| |||||||||||| |||||||||||| Sbjct 23610 TGTCTTTACCATTGTAGCACGTGTGTAGCCCAGTTCATAAGGGCCATAAGGACTTGACGT 23669 Query 135 CATCCCCACCTTCCTC 150 |||||||||||||||| Sbjct 23670 CATCCCCACCTTCCTC 23685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415976420470