Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq4012 226 5e-57 seq4718 150 3e-34 seq870 131 3e-28 >seq4012 Length=1494 Score = 226 bits (250), Expect = 5e-57 Identities = 224/290 (77%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| | |||| |||||||||||||||||| Sbjct 640 CCCACGCTTTCGAGCCTCAGCGTCAGTAATGAGCCAGTGTGTCGCCTTCGCCACTGGTGT 699 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || |||| ||||||||| |||||||| |||||| |||| |||| |||||| || Sbjct 700 TCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAGTTCCACACACCTCTCTCATAC 759 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| | |||| ||||| ||| |||||||||| | |||||| |||||| Sbjct 760 TCAAGACACCCAGTATCAAAGGCAATTCCGAGGTTGAGCCCCGGGATTTCACCCCTGACT 819 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| | |||||||| |||| ||| |||| |||||| ||| ||| || Sbjct 820 TAAATGTCCGCCTACGCTCCCTTTACGCCCAGTAATTCCGAGCAACGCTAGCCCCCTTCG 879 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| ||||| ||| | |||| Sbjct 880 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTCTCCGGGTA 929 >seq4718 Length=1216 Score = 150 bits (166), Expect = 3e-34 Identities = 197/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || |||||| | | |||| | |||||||||| ||||||| | Sbjct 923 GCTTTCGTCTCTGAGTGTCAGTAATAGCCCAGTAGAGTGCCTTCGCCATCGGTGTTCTTT 864 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||||||||||||||||||| ||| | |||||| | || || | ||||||| Sbjct 863 CCAATATCTACGCATTTCACCGCTCCACTGGAAATTCCCTCTACCCCTACTATACTCAAG 804 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | ||||| | ||||||||| || ||| ||| ||||| Sbjct 803 TCTTCTAGTTTCTACTGCAGATTTGAGGTTGAGCCTCAAGATTTAACAGTAGACTTAGAA 744 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || ||| || | |||||| |||| |||||||||||||| ||||| || ||| ||| Sbjct 743 AACCACCTGCAGACGCTTTACGCCCAGTAAATCCGGATAACACTTGCATCCCCCGTCTTA 684 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||||||||||||||||| ||||||||| |||| Sbjct 683 CCGCGGCTGCTGGCACGGAGTTAGCCGATGCTT 651 >seq870 Length=38067 Score = 131 bits (144), Expect = 3e-28 Identities = 202/281 (72%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTG-TCCAGCAATCCGCCTTCGCCACTGGTG 59 |||| ||||||| ||||| ||||||| | || || || | ||||||||||| ||||| Sbjct 24084 CCCATGCTTTCGTCCCTCAACGTCAGT-ATTGATCTAGATAGCCGCCTTCGCCTCTGGTA 24142 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCG--ATTGCCTCTCCAG 117 ||||| | ||||||||| || ||||| || || | ||||| | || ||| || | Sbjct 24143 TTCCTTCACATATCTACGGATATCACCCCTCCATGTGAAATTCTGCTATCTCCTATCAA- 24201 Query 118 CACTCAAGAAAAACA-GTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCT 176 |||||| | | |||| | | || || | ||| ||| | ||| || ||| Sbjct 24202 -ACTCAAAGCATTTACGTTTTAGAAGC-GGAAAAAAGTTAAGCTTTTTTATTTAACCTCT 24259 Query 177 GACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACC 236 || | | |||||| |||||||| |||| | | ||||||||||||| ||| || Sbjct 24260 AACAAAAAATGCTGCCTACGGACCCTTTACGCCCAGTCATTCCGGATAACGCTCGCCCCC 24319 Query 237 TACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCT 277 | |||||||||||||||||||||||| ||||||||| |||| Sbjct 24320 TTCGTATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCT 24360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828753022321