Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq870 100 2e-19 seq4833 87.8 1e-15 >seq870 Length=38067 Score = 100 bits (110), Expect = 2e-19 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| ||||||||||| | ||||| || | |||||||||||||||| | Sbjct 34388 TACCTTTTATCCATTGAGCGATGGTCTTTCCACACAGAACCACCGGATCACTATGTTCAA 34447 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| ||||||| | |||| ||| || ||||||| ||| ||||||| |||| Sbjct 34448 CTTTCGTTTCTGCTCGATTTGTCAATCTTACAGTCAAGCAGGCTTATGCCATTACACT 34505 >seq4833 Length=1120 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| | || ||||| ||| | |||||||||| |||| Sbjct 428 TAACTTTTATCCGTTGAGCGACGACCTTTCCACTCAGGATCGTCGGATCACTAAGACCGA 369 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | |||| ||||||| |||||| |||||||| || |||| Sbjct 368 CTTTCGTCTCTGCTTGACTTGTACGTCTCGCAGTCAAGCTTCCTTTTGCCTTTACACT 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351980691700