Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq870 100 3e-19 seq4833 75.2 1e-11 >seq870 Length=38067 Score = 100 bits (110), Expect = 3e-19 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||| | ||||| ||||||||||||||||||||| | |||||| |||| Sbjct 34401 TTGAGCGATGGTCTTTCCACACAGAACCACCGGATCACTATGTTCAACTTTCGTTTCTGC 34460 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| |||| ||| ||||||||| |||||||||||| |||| Sbjct 34461 TCGATTTGTCAATCTTACAGTCAAGCAGGCTTATGCCATTACACT 34505 >seq4833 Length=1120 Score = 75.2 bits (82), Expect = 1e-11 Identities = 110/156 (71%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| | || ||||| |||| | | |||||||||| |||| |||||| ||| Sbjct 416 GTTGAGCGACGACCTTTCCACTCAGGATCGTCGGATCACTAAGACCGACTTTCGTCTCTG 357 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 || || || |||||||||||||| ||| |||| || |||| | |||| || Sbjct 356 CTTGACTTGTACGTCTCGCAGTCAAGCTTCCTTTTGCCTTTACACTCTTCGATCGATTTC 297 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| | || ||||| |||| ||||||||| Sbjct 296 TATCCGATCTGAGGAAACCTTTGTGCGCCTCCGTTA 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473573155612