Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4833 268 1e-69 seq870 192 9e-47 >seq4833 Length=1120 Score = 268 bits (296), Expect = 1e-69 Identities = 225/275 (82%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| ||||| || ||||| ||||| Sbjct 764 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCATTCCATACATAGCTACCCAG 705 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| ||| || ||| ||||| || ||||||||||||| Sbjct 704 CGTTTACCGTTGGCACGATAACTGGTACACTAGCGGTATGTCCTTCTCGGTCCTCTCGTA 645 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| || | ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 644 CTAGAGAAGGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 585 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| Sbjct 584 CGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 525 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | ||||||||||| || |||||||||||| Sbjct 524 GTACTACCGCCCCAGGATGCGATGAGCCGACATCG 490 >seq870 Length=38067 Score = 192 bits (212), Expect = 9e-47 Identities = 201/262 (77%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 ||||| |||| |||||| ||||| | ||| |||||| || || |||| ||| | Sbjct 34067 GCTTATATGCTTTCAGCAATTATCTAATATAAATGTAGCTTTCCGGCCATGCCTTTGATA 34126 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC--AGCTC 133 ||||| ||| |||| | ||| |||||||||||||||||||||| | || | Sbjct 34127 AGACAACCGGTCTACCATTGATTTACTTTTCCCGGTCCTCTCGTACTAAGGTCTAAGTT- 34185 Query 134 CTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAAC 193 |||||| |||| ||||| || |||||||||||||||||||| ||||||||| ||| Sbjct 34186 -TCTCAATTTTCTAACGCCTACAGTAGATAGGGACCGAACTGTCTCACGACGTTCTAAAC 34244 Query 194 CCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 ||||||| ||| || | || | ||||||||||| ||||||||| ||| ||||||| || Sbjct 34245 CCAGCTCACGTACCACCTTCCTCGGCGAACAGCCGAACCCTTGGAACCACCTTCAGCTCC 34304 Query 254 AGGATGAGACGAGCCGACATCG 275 |||||| || |||||||||||| Sbjct 34305 AGGATGTGATGAGCCGACATCG 34326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780755743036