Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq4012 280 4e-73 seq4718 228 2e-57 seq870 147 5e-33 >seq4012 Length=1494 Score = 280 bits (310), Expect = 4e-73 Identities = 309/411 (75%), Gaps = 34/411 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| || ||| ||||| |||| |||||||||||||||| |||||||| |||||||| Sbjct 958 TTTACAATCCTAAGACCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTTCGCCCATT 1017 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | |||| |||||||||||||||||||||||||||| ||| |||||||||||| ||| ||| Sbjct 1018 GCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGT 1077 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| || ||| Sbjct 1078 GGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGGTCCATTACACCACCA 1137 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | ||| ||| || | || | || | ||| | || Sbjct 1138 ACTAGCTAATCAGACGCGGGCCGCTCCAATGGCGATA------AATCTTTCCCCCGAAGG 1191 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 | || || |||||||||| |||||| ||||| || ||| |||| Sbjct 1192 GC-----AC---ATACGGTATTAGCTCAAGTTTCCCTGAGTTATTCCGTACCAAAGGGCA 1243 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAGCAAGCTGCTTCCT 363 |||||| |||||||||||||||||||| ||| ||||| ||| Sbjct 1244 CGTTCCCACGTGTTACTCACCCGTCCGCCACTAAGTC--CGAAG---------ACTT--- 1289 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1290 -----CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGCTCTGAG 1335 >seq4718 Length=1216 Score = 228 bits (252), Expect = 2e-57 Identities = 310/427 (73%), Gaps = 33/427 (8%) Strand=Plus/Minus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| | | | | |||| || ||||||| || ||| |||||||| ||||||| Sbjct 606 TTTACAACTCAGTAAGTCTTCATCCCTCACGCGGTATTGCTCTGTCAGGCTTTCGCCCAT 547 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || || ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 546 TGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 487 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| || ||||||||||||||||| ||||||||||| ||| |||| |||||| || Sbjct 486 TGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCTTTACCCTACC 427 Query 184 AACTAGCTAATCCCATCTGGGTTCATC-CGATAGTGAGAGGCCCGA---AG--------G 231 ||||||||||| || | | | | || | || ||||| || || Sbjct 426 AACTAGCTAAT--CAGCCGCGAGCTTCTCTTCAGGCAGAGGTAAGAGTCAGTATTACTTA 369 Query 232 TC-CCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCC 290 || || || ||| | | || |||| ||| ||||| | ||||||| ||||||| Sbjct 368 TCTCCTCTGTTTCACCCAG-GAGCATATGGGGTTTTAGCGAATGTTTCCATCCGTTATCC 310 Query 291 CCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT---CGTCAGCGAAG 347 |||||| |||| ||| || |||||||||||||||||||| | | ||||| Sbjct 309 CCCTCCTAAAGGCGAATTCTCACGTGTTACTCACCCGTCCGCCACTAAAATTAACCGAAG 250 Query 348 CAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407 || || ||||||||||||||||||| |||| | ||||||||||||| Sbjct 249 -----------TT--AATTTCCGTTCGACTTGCATGTGTAAGGCATACCGCCAGCGTTCA 203 Query 408 ATCTGAG 414 ||||| Sbjct 202 TCCTGAG 196 >seq870 Length=38067 Score = 147 bits (162), Expect = 5e-33 Identities = 150/195 (77%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||| ||| |||||| ||| || | | || |||| |||| |||| ||| |||| Sbjct 24402 TTTACAACTTGAAAGCCTTCATCACTCATGTAGTATTGCTGGATCAAGCTTTCGCTCATT 24461 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||| ||||| |||||||| |||| | || |||| || ||||||||| ||||||| Sbjct 24462 GTCCAAAATTCCTCACTGCTGGCTCCAAATGAAGCCTGGGCCTTGTCTCAGTCCCAGTGT 24521 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC---CG 181 ||||| || ||||||||| |||||| ||||| | | || ||| |||| |||||| Sbjct 24522 GGCTGTACAACCTCTCAGAACAGCTAAGGATCATAGGCTTGGTAGGCCTTTACCCAAATA 24581 Query 182 CCAACTAGCTAATCC 196 ||||||| ||||||| Sbjct 24582 CCAACTACCTAATCC 24596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222328477376