Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq4012 385 1e-104 seq4718 342 2e-91 seq870 266 1e-68 >seq4012 Length=1494 Score = 385 bits (426), Expect = 1e-104 Identities = 292/343 (85%), Gaps = 1/343 (0%) Strand=Plus/Minus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 |||||||||||||||||||||||| |||| || ||||||||||||||||||||| | Sbjct 1157 CCCGCGTCTGATTAGCTAGTTGGTGGTGTAATGGACCACCAAGGCGACGATCAGTAGCTG 1098 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||| Sbjct 1097 GTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGC 1038 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||| |||| |||||||| ||||||||| ||||| | ||||||||| ||| Sbjct 1037 AGCAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGACGCAGCCATGCCGCGTGAATGAT 978 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| ||| || | ||||| ||| || | ||| |||||||||||||| | || | Sbjct 977 GAAGGTCTTAGGATTGTAAAATTCTTTCACCGGGGACGATAATGACGGTACCCGGAGAAG 918 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 917 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCG 858 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||| |||||||||||| ||||||| || ||||||| Sbjct 857 GAATTACT-GGGCGTAAAGGGAGCGTAGGCGGACATTTAAGTC 816 >seq4718 Length=1216 Score = 342 bits (378), Expect = 2e-91 Identities = 287/346 (83%), Gaps = 6/346 (2%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||| | Sbjct 408 CGCGGCTGATTAGCTAGTTGGTAGGGTAAAGGCCTACCAAGGCGACGATCAGTAGCTGGT 467 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 468 CTGAGAGGACGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAG 527 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| || |||||||| ||||||||| ||||| ||||||||| ||||| Sbjct 528 CAGTGAGGAATTTTCTGCAATGGGCGAAAGCCTGACAGAGCAATACCGCGTGAGGGATGA 587 Query 340 AGGCCTTC-GGGTCGTAAAGCTCTGT-CCTCAAGGAAGATAA--TGACGGTACTTGAGGA 395 || | | | | || ||||| ||| || ||| |||||||| | ||||||||||| ||| Sbjct 588 AGACTTACTGAGTTGTAAACCTCGGTACCTTAAGGAAGAAGATCTGACGGTACTTAAGGT 647 Query 396 GG-AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 454 || |||| ||||||||| |||||||||||||||||||| ||| || || || ||||| Sbjct 648 GGAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCAAGTGTTAT 707 Query 455 CCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| ||||| |||||||||| || | ||||||||| |||||| Sbjct 708 CCGGATTTACT-GGGCGTAAAGCGTCTGCAGGTGGTTTTCTAAGTC 752 >seq870 Length=38067 Score = 266 bits (294), Expect = 1e-68 Identities = 254/323 (79%), Gaps = 4/323 (1%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAA---GGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||| ||||||||| ||||| ||| ||||||| | | |||| |||| | |||| Sbjct 24595 GATTAGGTAGTTGGTATTTGGGTAAAGGCCTACCAAGCCTATGATCCTTAGCTGTTCTGA 24536 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| || | |||||| ||| ||||||||| || ||| || | |||| ||||||| Sbjct 24535 GAGGTTGTACAGCCACACTGGGACTGAGACAAGGCCCAGGCTTCATTTGGAGCCAGCAGT 24476 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 | ||||| ||| |||||| || ||||| |||| |||||| | | |||| ||||||||| Sbjct 24475 GAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACTACATGAGTGATGAAGGC 24416 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 ||| || ||||| |||| | | |||| ||||||||| ||||| | | ||||| Sbjct 24415 TTTCAAGTTGTAAAACTCTTTGGTTGAGGAGGATAATGACAGTACTCAACAAAATAGCCC 24356 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| | Sbjct 24355 CGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCGAGCGTTATCCGGAATGA 24296 Query 464 CTGGGGCGTAAAGGGTGCGTAGG 486 || ||||||||||||| |||||| Sbjct 24295 CT-GGGCGTAAAGGGTCCGTAGG 24274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497512375424