Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq4012 408 1e-111 seq4718 273 5e-71 seq870 232 2e-58 >seq4012 Length=1494 Score = 408 bits (452), Expect = 1e-111 Identities = 331/400 (83%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 921 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 862 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||||||||||||||||| ||||||| || ||||||||| ||||||| | Sbjct 861 CTCGGAATTACTGGGCGTAAAGGGAGCGTAGGCGGACATTTAAGTCAGGGGTGAAATCCC 802 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||| ||| | ||| ||||| |||| | || |||| ||| || ||| Sbjct 801 GGGGCTCAACCTCGGAATTGCCTTTGATACTGGGTGTCTTGAGTATGAGAGAGGTGTGTG 742 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||| ||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||||| Sbjct 741 GAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGGCGAAGGCG 682 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 | |||| | |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 681 ACACACTGGCTCATTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 622 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||||||||||||||| | |||| ||||||| |||| | | || Sbjct 621 ACCCTGGTAGTCCACGCCGTAAACGATGATTGCTAGTTGTCGGGATGCAT--GCATTTCG 564 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||||| |||||| |||| | ||| ||||||||||| Sbjct 563 GTGACGCAGCTAACGCATTAAGCAATCCGCCTGGGGAGTA 524 >seq4718 Length=1216 Score = 273 bits (302), Expect = 5e-71 Identities = 309/410 (75%), Gaps = 3/410 (1%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAA-GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 59 ||||| ||| |||| || ||||||||| |||||||||||||||||||| ||| || | Sbjct 638 TACTTAAGGTGGAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATG 697 Query 60 CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGG 119 | || |||||||||| ||||||||||||||| || | ||||||||| |||||| | Sbjct 698 CAAGTGTTATCCGGATTTACTGGGCGTAAAGCGTCTGCAGGTGGTTTTCTAAGTCTACTG 757 Query 120 TGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAG 179 | ||| | ||||||||| | |||| | |||||| | | || |||| || || Sbjct 758 TTAAATCTTGAGGCTCAACCTCAAATCTGCAGTAGAAACTAGAAGACTTGAGTATAGTAG 817 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 ||| | |||||| | |||| |||||||||||||||||||||| | | ||||||| || Sbjct 818 GGGTAGAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATG 877 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||||| | |||| || | ||||||||| || ||||||| |||||||||| Sbjct 878 GCGAAGGCACTCTACTGGGCTATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAATG 937 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT- 358 ||||||||||||| ||||||| ||||||||||||| ||||| | ||| || || || Sbjct 938 GGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTCGATGT-TGGACGTATC 996 Query 359 AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | | || | ||| ||||| ||||||| || ||||||||||| Sbjct 997 AACCCGTTCAGTATCTTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 1046 >seq870 Length=38067 Score = 232 bits (256), Expect = 2e-58 Identities = 248/325 (76%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 24360 AGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCGAGCGTTATCCGG 24301 Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGC 133 ||| |||||||||||||||| |||||| | | || || |||||| ||| | || Sbjct 24300 AATGACTGGGCGTAAAGGGTCCGTAGGCAGCATTTTTTGTTAGAGGTTAAATAAAAAAGC 24241 Query 134 TCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTA-GAGTGCAGGAGGGGCAAGTGGAAT 192 | ||| | |||| | |||| | ||| |||| ||| | || |||| Sbjct 24240 TTAACTTTTTTCC-GCTTCTAAAACGTAAATGCTTTGAGTTTGATAGGAGATAGCAGAAT 24182 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | || || ||||| || ||||||||| | ||||| ||||| ||||||||||||| Sbjct 24181 TTCACATGGAGGGGTGATATCCGTAGATATGTGAAGGAATACCAGAGGCGAAGGCGGCTA 24122 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 || || |||||| ||||| ||||||| |||||||||||||||||||||||||| Sbjct 24121 TCTAGATCAATACTGACGTTGAGGGACGAAAGCATGGGGAGCAAACAGGATTAGATACCC 24062 Query 313 TGGTAGTCCACGCCGTAAACGATGA 337 |||||||||| ||| |||| ||||| Sbjct 24061 TGGTAGTCCATGCCCTAAAAGATGA 24037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203129600768