Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq4642 282 8e-74 >seq4642 Length=1491 Score = 282 bits (312), Expect = 8e-74 Identities = 219/258 (85%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAG-CCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||| ||||| | || |||| ||||||| | |||||||||||||||||| Sbjct 780 CTTCTTAGAGGGACTTTCGGCGCTAGGCCGAAGGAAGTTGGGGGCAATAACAGGTCTGTG 721 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| ||||||||| || | Sbjct 720 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTTTATAA 661 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||| |||||||| | ||||||||||| | | | ||||| | |||||||| |||| Sbjct 660 CCTTGTCCGGAAGGACCGGGTAATCTTGAAATGCGC-ATCGTGATAGGGATAGATTATTG 602 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| |||| |||||||||| |||||||| |||| ||||||||| ||| |||||| Sbjct 601 CAACTATTAATCTTGAACGAGGAATTCCTAGTAAACGCGAGTCATCAGCTCGCATTGATT 542 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 541 ACGTCCCTGCCCTTTGTA 524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947144579328