Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq4011 259 2e-66 seq4588 233 6e-59 seq870 125 2e-26 >seq4011 Length=2654 Score = 259 bits (286), Expect = 2e-66 Identities = 349/477 (73%), Gaps = 12/477 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAG--TCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||| | ||| | || |||||||||||| |||||||| ||| Sbjct 1404 CGAGTCTGAATAGGGCGCTAAGTTCGACGTATGACGACCCGAAACCAGGTGATCTATCCA 1345 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||||||||||| |||||||| ||||||||||||||| |||||||||| Sbjct 1344 TGAGCAGGATGAAGGTTGGGTAACACCAACTGGAGGTCCGAACCGGTGTCTGTTGAAAAA 1285 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 |||||| ||||| |||||||||||||| || ||||| |||| |||||||||||| Sbjct 1284 GACTCGGATGACTTGTGGATAGGGGTGAAAGGCCAATCAAACCTGGACATAGCTGGTTCT 1225 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTA 237 | ||||| |||||||||||| || || | | || || | ||||||||||||||| | Sbjct 1224 CCGCGAAATCTATTTAGGTAGAGCGTCCGACGAAT-TCCTTGGGGGGTAGAGCACTG-GA 1167 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 ||| | ||| | | | |||||| | |||||||||||| | || || | Sbjct 1166 TGGTTGCGGGCTGCGCGAGCGGTACCAATACTAACCAAACTCCGAATACCCAAGAGAACT 1107 Query 298 ACCGCG-GGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | || | || | ||| ||||||||| |||||| | ||| || || || || Sbjct 1106 ATCGGGCAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCTAAC 1049 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 |||| |||||||||| || | || ||||||| | ||||| || ||||||| ||| Sbjct 1048 CATCATCTAAGGCCCCCAAGTAACGGCTAAGTGGGA--AACGATGTGGGATTGCTTTGAC 991 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 | |||| |||||||| |||||||||| || |||||||| ||||||||||||||| Sbjct 990 AATCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAACAGCTCACT 935 >seq4588 Length=1737 Score = 233 bits (258), Expect = 6e-59 Identities = 387/548 (71%), Gaps = 33/548 (6%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||| || ||||||| ||||| ||||||||||| | ||||| || |||| Sbjct 1217 AGACCCGAACCCGGATGATCTAACCATGACCAGGATGAAGCTTAGGTAAAACTAAGTGGA 1158 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||||||| ||| |||||||||||| || ||||||| ||||| ||||||||||| || Sbjct 1157 GGTCCGAACTGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 1098 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGT--AGTGCCTCAAGTA 211 || | || ||| |||||||||||| |||||| | |||||| || | | | | Sbjct 1097 AATCGAATCCGGAGCTAGCTGGTTCTCCCCGAAATGTGTTTAGGCGCAGCGGTTGACAGA 1038 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCTAGGG--GGTCATTGCGACTTACCAAACCA 269 || | |||||| ||||||||| || ||| ||| ||| | ||||||| | Sbjct 1037 AAAC--TTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGGTAATTCGG---TACCAAATCG 983 Query 270 TTGCAAACTCCGAAT-------GCGCATCAGTTTTACCGCGGG--------AGTGAGGGC 314 |||||||| |||| || | || ||| | || ||| || Sbjct 982 AGGCAAACTCTGAATACTAAGTGCCCCTCCGTTAGGAGGGAGGCGTCAACTAGTAAGACT 923 Query 315 ATGGGTGCTAAGGTCC-GTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCG 373 |||| | |||| ||| ||| | |||||| || | || ||| | | ||||||||||| Sbjct 922 CTGGGGGATAAGCTCCAGTGTC-GAGAGGGAAACAGCCCAGACCACCGGCTAAGGCCCCA 864 Query 374 AAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTT 433 |||||| ||||||| | | || ||||| || ||| | ||| | |||| ||| |||| Sbjct 863 AAATGATGGCTAAGTGACA--AAGGAAGTGGGAAGGCTGAAACAACCAGGAGGTTTGCTT 806 Query 434 GGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGG 493 |||||||| || | || ||||||||||||| |||||||| |||||| | || ||| | Sbjct 805 AGAAGCAGCAATCC-TTGAAAGAGTGCGTAATAGCTCACTGGTCGAGCAATCTTGCGCCG 747 Query 494 ATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT--CATTTATA-TGATCGGT 550 | ||| | |||| | ||||| ||| ||||||| ||||||| | || | | | |||||| Sbjct 746 AAAATTAGCGGG-ACTAAGTCATCTGCCGAAGCCGTGGGATAGCTTTAAGAGTTATCGGT 688 Query 551 AGGGGAGC 558 |||||||| Sbjct 687 AGGGGAGC 680 >seq870 Length=38067 Score = 125 bits (138), Expect = 2e-26 Identities = 129/168 (77%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGT---AACACGCCCTGG 92 ||||||||| |||||||||| ||||| |||| |||| | | | |||| ||| Sbjct 35969 ACCCGAAACTAAGTGATCTAACCATGAACAGGTTGAAAATTTGATGGAAACATTAATTGG 35910 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| |||||| | |||||||| ||| ||||||| ||||| |||||||||||||| Sbjct 35909 AGGACCGAACTCGTGTATGTTGAAGAATACTGGGATGATTTGTGGTTAGGGGTGAAAGGC 35850 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 ||| ||||||| || |||||||||| || ||||| ||||||| |||| Sbjct 35849 TAATCAAACTTAGATATAGCTGGTTTTCCGCGAAATCTATTTAAGTAG 35802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689501141504