Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4160 625 1e-176 seq4011 75.2 4e-11 >seq4160 Length=3530 Score = 625 bits (692), Expect = 1e-176 Identities = 464/536 (87%), Gaps = 10/536 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| |||||| Sbjct 2814 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTAACCTTAGGACACCTGTGTTATG 2755 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||| |||| | | |||| Sbjct 2754 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGTTGTCTCCCGCGTAGATC 2695 Query 127 --GGCCCGCGAAGGACCTT-AACGCCAGAAAATGGT-CGGTGAAG--ACCAGT-TCCGCT 179 || || |||||| | || || | |||| || | |||||| || | || | Sbjct 2694 ACGGGCCTCGAAGGCCGTTTAAATCTAGAACCAGGCGCCGTGAAGCGACTGGACTCTACG 2635 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 || || ||||||||| ||| || | |||||||||||||| ||||| | |||| Sbjct 2634 CCACGGAATAAGTAAAACAACATTACGAGTAGTGGTATTTCATCGTCGCCGGA---GCTC 2578 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 2577 CCACTTATGCTACACCTCATAAGTCATTTCACAACGTCGGACTAGAGTCAAGCTCAACAG 2518 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 2517 GGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATG 2458 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2457 GCAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAATTAGATGACG 2398 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2397 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 2338 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2337 AATTCCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 2282 >seq4011 Length=2654 Score = 75.2 bits (82), Expect = 4e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||||||| | |||||| |||||| ||| ||| | ||| ||| ||| |||| Sbjct 180 GACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 239 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || || |||||||| |||||||||||| | |||| Sbjct 240 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCTGGGCTT 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635104324448