Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq4011 277 6e-72 seq870 159 1e-36 seq4833 131 6e-28 >seq4011 Length=2654 Score = 277 bits (306), Expect = 6e-72 Identities = 282/371 (76%), Gaps = 20/371 (5%) Strand=Plus/Plus Query 195 TATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 |||||||| |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 1 TATTTCAAGGACGACTCCACCGAGGCTGGCGCCCCGGCTTCATAGTCTCCCACCTATCCT 60 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GGGTCTTTTCGT 313 ||||| || | | || ||||| | |||||||||| ||||| | |||||||| ||| Sbjct 61 ACACATACGGTCGCTAACGCCAAGGCGAAGCTATAGTAAAGGTTCATAGGGTCTTTCCGT 120 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | ||||| ||| | ||||||| || | | | ||||||||| | ||||||| | ||| Sbjct 121 CTGACCGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGCCTGTGCTGGAG 180 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 240 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| ||||||||||| ||||||||||| |||||||| || ||| | Sbjct 241 CTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCTGGGCTTCAGTTCGACGCTT-- 298 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 |||| ||| ||||||||| |||||||||||||||||| | Sbjct 299 -----------------TCACATCTCCCTTTAACCTTCAGGCACCGGGCAGGCGTCAGAC 341 Query 554 CGTATACCTCG 564 | ||||| ||| Sbjct 342 CCTATACGTCG 352 >seq870 Length=38067 Score = 159 bits (176), Expect = 1e-36 Identities = 201/278 (72%), Gaps = 20/278 (7%) Strand=Plus/Plus Query 287 ATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTA 345 ||||| ||||| | |||||||| |||| || | | || |||||| || || Sbjct 34704 ATAGTAAAGGTGCATAGGGTCTTTCCGTCTAGCTGTAGGTAATCTGCATCTGCACAGATA 34763 Query 346 CTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAG 405 | ||||||||| | | |||| |||||||| ||| ||||||||| |||||| ||||| Sbjct 34764 TTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCGTTACACCATTCATGCAG 34823 Query 406 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCG 465 ||||||||||||||||||||||||||||||||||| ||| || | |||||| |||||| Sbjct 34824 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTCAGAGTTACAGCCGCCG 34883 Query 466 TTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTA 525 ||||||||| ||| || ||| | ||| | ||| |||| Sbjct 34884 TTTACTGGGACTTAGGTTTGAAGCC---AAAACCTC----------------TCCCCTTA 34924 Query 526 ACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 | ||| |||||||||||||| |||||||| ||||| || Sbjct 34925 ATCTTGCAGCACCGGGCAGGTGTCAGTCCCTATACATC 34962 >seq4833 Length=1120 Score = 131 bits (144), Expect = 6e-28 Identities = 122/154 (79%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 |||||||| |||||||||||||||| |||| ||| |||||||| | |||| | | Sbjct 353 GACTTGTACGTCTCGCAGTCAAGCTTCCTTTTGCCTTTACACTCTTCGATCGATTTCTAT 294 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 || |||||| |||||||| ||||||||||||| |||| ||| ||| ||||||||||| Sbjct 293 CCGATCTGAGGAAACCTTTGTGCGCCTCCGTTACCTTTTAGGA-GGCGACCGCCCCAGTC 235 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGAT 156 ||||| |||||| || | ||||| | ||| ||| Sbjct 234 AAACTGCCCACCTGGGAGTGTCCTCTCCCCGGAT 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702300392576