Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq4012 183 6e-44 seq4718 152 1e-34 seq870 100 6e-19 >seq4012 Length=1494 Score = 183 bits (202), Expect = 6e-44 Identities = 160/198 (81%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 |||||| |||||||||| ||| |||||||| ||||||| | |||||| |||| || | Sbjct 951 AAAGAATTTTACAATCCTAAGA-CCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTT 1009 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| ||| ||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1010 CGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGT 1069 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||||||||| || | |||||||||| | ||| ||||| | || ||||| || ||| Sbjct 1070 CCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGGTCCATTA 1129 Query 262 CCCCGCCTACTACCTAAT 279 | || || |||| ||||| Sbjct 1130 CACCACCAACTAGCTAAT 1147 >seq4718 Length=1216 Score = 152 bits (168), Expect = 1e-34 Identities = 153/196 (78%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 85 GAAGTTTACAA-TCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCG 143 || |||||||| || ||| | |||||||| |||||| | ||| |||| || ||| Sbjct 610 GAGGTTTACAACTCAGTA-AGTCTTCATCCCTCACGCGGTATTGCTCTGTCAGGCTTTCG 552 Query 144 TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTC 203 |||||| || |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 551 CCCATTGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC 492 Query 204 CAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACC 263 || ||||| || | |||||||||| | ||| ||||| | || ||| |||| ||||| Sbjct 491 CAGTGTGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCTTTACC 432 Query 264 CCGCCTACTACCTAAT 279 | || |||| ||||| Sbjct 431 CTACCAACTAGCTAAT 416 >seq870 Length=38067 Score = 100 bits (110), Expect = 6e-19 Identities = 146/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACT-TGGCTGGTTCAGACTC 140 ||||| ||||||| | | | |||||||| ||| | || | | ||||| ||| || Sbjct 24395 AAAGAGTTTTACAACTTGAA-AGCCTTCATCACTCATG-TAGTATTGCTGGATCAAGCTT 24452 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| ||||| |||| |||||||||||||| |||| | || ||| || |||||||| Sbjct 24453 TCGCTCATTGTCCAAAATTCCTCACTGCTGGCTCCAAATGAAGCCTGGGCCTTGTCTCAG 24512 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| | | ||||||||||| ||| ||| |||||| ||| |||| || Sbjct 24513 TCCCAGTGTGGCTGTACAACCTCTCAGAACAGCTAAGGATCATAGGCTTGGTAGGCCTTT 24572 Query 261 ACCC---CGCCTACTACCTAAT 279 |||| || |||||||||| Sbjct 24573 ACCCAAATACCAACTACCTAAT 24594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068737464512