Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5145 488 2e-135 >seq5145 Length=677 Score = 488 bits (540), Expect = 2e-135 Identities = 418/512 (82%), Gaps = 16/512 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||||||||| | ||| ||| ||| | || |||||||||||||||||| Sbjct 525 GTTCTCATTCCAATTGCCAGAGTTAAAC---CCCGGCATTGTTATTTATTGTCACTACCT 469 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 468 CCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTC 409 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| Sbjct 408 TCTCAGGCTCCCTCTCCGGAATCGAACCCCAATTCTCCGTTACCCGTTAGAGCCATGGTA 349 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || ||||||||| |||| |||||||||||||| |||||||| | |||| ||| Sbjct 348 GGCCAATACCCTACCATCCAAAGCTGATAGGGCAGAAACTTGAATGATTCGTCGCTGGCA 289 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG---GGCGTT 297 ||| | ||||| || ||||||| |||| |||||| || | | || || Sbjct 288 AAAG--CCGGCGATCCGCAAAGTTATCATGATTCACCACAATACCGGGTTGCCCCGCATT 231 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATT 352 || ||| ||||||||||||||| ||| ||||| ||| ||| || ||||||||| Sbjct 230 GG-TTTCTATCTAATAAATACATCCCGTCCGACAAGCAGTTGGGAGTTGATGCATGTATT 172 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| ||||||||||| ||||||| | |||||||||||||| |||||||| Sbjct 171 AGCTCTAGAATTACTACGGTTATCCAAGTAGTAAAGGACTATCAAATAAACTATAACTGA 112 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 | ||||||||||||||||| |||| | | | | |||| || |||| |||||||||| Sbjct 111 TATAATGAGCCATTCGCAGATTCA--GAGAAAACTCTTTATTCTCAGACGTGCATGGCTT 54 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| ||||||||||||||| Sbjct 53 AATCTTTGAGACAAGCGTATGACTACTGGCAG 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510311626496