Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3524 307 8e-79 seq4035 138 9e-28 seq2878 100 2e-16 >seq3524 Length=35516 Score = 307 bits (340), Expect = 8e-79 Identities = 547/793 (69%), Gaps = 14/793 (2%) Strand=Plus/Plus Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072 ||| || ||||||||||| || | ||| || || || |||||||||| || || ||||| Sbjct 11116 AGAGGCAAGGTTGCAGACGGCAACCTCATCGGGCGCCGTATACTCGATGATCTCCGTGCA 11175 Query 66073 CAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCA 66130 ||| || | || | || |||| |||||| || || |||| ||||||| ||| Sbjct 11176 CAGGTTG--GAAGACTTGATAACTCCCAGATTCTGCTGGTTCGACTTGAGATTGCAGGCA 11233 Query 66131 TCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAA 66190 |||||| | | ||| || || ||||| ||||| || || || || | | || ||| Sbjct 11234 TCCTTGAAGAGCATATAGGGCGTGCCCGTCTCCACCTGTGAGTCCAACACCGCAAACCAC 11293 Query 66191 AGAGCGCGTGCCTT---CACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAG 66247 || | ||||| |||| | || |||| | || | ||||| || || Sbjct 11294 AGCTGCTGGGCCTTGATCACCTTGCG---CGCCTTGCCACTCTTCTCGTACGTCTCATAC 11350 Query 66248 AGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATC 66307 || || | || || || ||||| || | ||| | || |||| || || || | | Sbjct 11351 AGCTGCTTAAATTCCTCTCCACATACGTCCGCCAGGCCAGGGCACTCGTTGGGGCAGAAC 11410 Query 66308 AGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCG 66367 || ||||| || || || | || || || |||| || |||||||| ||||||||||| Sbjct 11411 AGAGACCAGTCGCCGTCGTTCTCCACGCGCTGCATGAACAGATCAGGCGTCCAGAGGGCG 11470 Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAAC 66427 ||||| | ||||| || || | | |||| ||||||| || ||||||| || |||||| Sbjct 11471 TAGAACAAGTCGCGGGCCCGCTCCAGCTCATTGCCGTGGTTCTTGCGCAGATCCAGGAAC 11530 Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487 || ||||| ||||| ||||| || ||||||||||||||||| |||||| | || ||||| Sbjct 11531 TCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAGCCCTTGCGCTTGCCC 11590 Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 ||||| ||||| |||||||| || | |||||||||||||| ||| || |||| ||| Sbjct 11591 CCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGATGCCG 11650 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTC 66607 || || | || || | ||| |||| || | || ||||| || | || | Sbjct 11651 TTGGAGGTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGGATGTTATGGATCGAG 11710 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAAT--CGGCCACTGTCCGGAATA 66665 | |||||| ||||| || ||| |||||||| ||||| | | | |||| | | Sbjct 11711 ACACCAATCCCACCTGCGAACTTGGAGATGGCCGCACATTGCTTGAGAGTGTC--ATAGA 11768 Query 66666 TGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGG 66725 | ||||| |||||||| |||| |||||||| ||| |||| || || || || | Sbjct 11769 TACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGGAGAGCTGCGGCCGCG 11828 Query 66726 GTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAAT 66785 | ||| |||| |||||| || || || ||||| || ||| | | |||||| || Sbjct 11829 GCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAGTGAAGAGCTTCTGGGACATGAGAT 11888 Query 66786 TGTACGTCTCGAT 66798 |||| ||||| || Sbjct 11889 TGTAGGTCTCAAT 11901 >seq4035 Length=10978 Score = 138 bits (152), Expect = 9e-28 Identities = 424/648 (65%), Gaps = 12/648 (2%) Strand=Plus/Plus Query 65989 CACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC 66048 || |||||| ||||| || | | || || | ||| || ||||| | ||| || || Sbjct 7170 CATCACAAATTTGGGCAGAACGATCGAGGCCAAGTTACACACAGCCACCTCCTCGGGGCT 7229 Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||| || ||| || ||||||| || || || || || || ||||| || || Sbjct 7230 CGTATACTGGATAATCTCCGTGCACAAGTTCGAGCTTCGAATCGTCCCTAAATTTTGCTG 7289 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| |||| || || || ||| | | ||| || || ||||| || || | || Sbjct 7290 ATTGCTCTTAAGATTACACGCGTCTTTGAAGAGCATATAAGGCGTGCCCGTTTCGATCTG 7349 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGT---ACCGCCCTACC 66225 || || | ||||||| ||| || | | || ||| || | || || | | Sbjct 7350 TGAGTCCAGGATGGCGAACCACAGGTCTTGCGCACGCACTGTCTTTTTTACTTTCCCAGC 7409 Query 66226 TTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT-ACT-TCGGACAGA 66283 ||| |||||| || || ||| || || || || || || ||| || Sbjct 7410 TTT---TTCGTATTGCAGATACAGGACCTCAAACTCTTTGCC--ATGACAGTCGCCCAAG 7464 Query 66284 CATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATA 66343 | ||||||| | ||||||||||| |||||| ||||| | || || | |||| Sbjct 7465 CCAGGACACTGATCAGGACACATCAGTGACCAAATCCCATCTTCCTCCACTCTCTTCATA 7524 Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || | ||| || ||||| || |||| ||||| ||||| || || || || | || Sbjct 7525 AACAAATCGGGAATCCAAAGCCCGTAAAAGAGGTCGCGCGCCCGGGCTTCTTCCTTCCCA 7584 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 || || || | ||||| || | ||| ||||| || |||||||| || || | ||| || Sbjct 7585 TGGTTCTTCCTTAAGTCAAGCACCTCGAAGATATCCGCATGCCAAGGCTCAATGTAAATA 7644 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC-GACATTGTTGAA 66522 || || | ||| || || || || || || ||||| || ||||| | || || || Sbjct 7645 GCAAATGCTCCCGGTCGCTTCCCTCCCCCCTGATCGACATACCGAGCAGTCA-CGTCAAA 7703 Query 66523 GACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCC 66582 ||||||| ||| || || | || ||| | || || || || | |||| | ||| Sbjct 7704 CACACGCAGCATGGGCACCAAGCCATTACTCGTTCCCTTCGTTCCTTTGATGTACGCTCC 7763 Query 66583 TCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTT 66630 | || || || | ||| ||| || ||||| ||||| |||| ||| Sbjct 7764 GTGCGCGCGAATGTTGTGCACAGACAAGCCAATCCCACCCGCCGCCTT 7811 >seq2878 Length=6153 Score = 100 bits (110), Expect = 2e-16 Identities = 192/278 (69%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 61287 GGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTA 61346 |||||| || || ||||||||||||||||| ||||| ||||| ||||| ||| | || Sbjct 5835 GGAGGCCCGCTGCTTCTACGGCTTCCAGATAGCCATCGAGAACATCCACAGCGAGGTATA 5894 Query 61347 CAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA-TTGTTCAATG 61405 | | |||||||| |||||||||| || ||| | | | || | | |||||| Sbjct 5895 CTCCCTCCTCATCGACACGTACATCA-AGAACGGTCAAGAGAAGCACAAGCTCCTCAATG 5953 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACC 61464 |||| || || | || || ||||| ||| | |||||| ||| ||| | ||| Sbjct 5954 CCATTGATACTGTGCCTTGTGTCCGTCGGAAGGCGCAGTGGGCCCTCAGGTGGTGCGACC 6013 Query 61465 AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 | | ||| || | || | || || || | || ||||||| || || ||| ||||| Sbjct 6014 GGAAGTACGCCT-CTTTCGCCGAGCGCCTGATTGCGTTTGCGGCTGTGGAAGGTATATTT 6072 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAA 61562 |||||||| ||||| | | || || ||| ||||||| Sbjct 6073 TTCAGTGGGTCGTTCTGCTCGATATTCTGGCTGAAGAA 6110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397539649798640