Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq5733 738 0.0 seq225 581 4e-161 >seq5733 Length=57551 Score = 738 bits (818), Expect = 0.0 Identities = 736/952 (77%), Gaps = 4/952 (0%) Strand=Plus/Minus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 ||||| | || ||||||||||||| || | ||||||||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 159890 ATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 159949 | |||||||||| |||| |||||||| || || || || || |||||||| ||||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 159950 CCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCT 160009 || || ||||| ||||| | ||||| |||||||| ||| | ||||||||| |||| | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 160010 TCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGG 160069 || ||||| |||||| |||||||||| || |||||||||| || || | ||||||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 160070 CTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCC 160129 || || ||||||||||||| |||||| ||||| || |||||| | | || | | | Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 41530 Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 || ||||| ||||| |||||||| |||||| | || |||||||| ||||| | || Sbjct 41529 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 41470 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 || | ||| |||||||| ||||| || ||||| |||||| | || ||||| | || || Sbjct 41469 GCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAA 41410 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTA 160309 ||| ||||| |||| ||||||| | ||||| ||||||||||| |||| ||| | ||| Sbjct 41409 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTA 41350 Query 160310 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTA 160369 ||||||||||||||||| || |||||||| || ||||| ||| ||||||||||| || Sbjct 41349 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 41290 Query 160370 TTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGA 160429 || ||||||||| | ||| ||||||||| || ||||| || || |||||| | || | Sbjct 41289 TTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 41230 Query 160430 GAGACGACAGAAACTGAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAGGAAGAGA 160487 || || || || | || | | ||||| |||||||| ||||| ||||| ||||| | Sbjct 41229 GAAACTGAAG--ACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAA 41172 Query 160488 CTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCT 160547 ||||||||||||| || ||||| || ||||| || ||||| ||||||||||| || | Sbjct 41171 CTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTT 41112 Query 160548 TTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGT 160607 | ||||||||||| || | ||||||||| | ||||| ||||| ||||| || ||||||| Sbjct 41111 TCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGT 41052 Query 160608 TCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGT 160667 | ||||| ||||||||| ||| |||||||| || | || ||||||||||||||||| | Sbjct 41051 TAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACCAAT 40992 Query 160668 CCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTG 160727 | | | || | ||||| | || | ||||||||||| ||| | | ||||| |||| Sbjct 40991 CAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTG 40932 Query 160728 GTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGA 160779 | | || |||||||| |||||||| |||||||| |||||||||||||| || Sbjct 40931 ATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 581 bits (644), Expect = 4e-161 Identities = 736/1004 (73%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 || |||||| | ||||||||||||||||| ||| |||| ||||| || ||| || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTT-TTATTATT 37893 Query 161587 CCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTG 161645 ||| || || | |||||| |||| || ||| | || || |||||||| | ||| || Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 161646 GTATACCCATGGACTCGCTAGTTCCTATCTTG-AGGGTGCAAATTTTCTTACAGCGGCAG 161704 |||||| |||||| | || ||| ||| | | ||| || || || | | || | |||| Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCT-TAACTGTAGCAG 38012 Query 161705 TTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTC 161764 | || ||||| || ||||||||| || | || | | ||||| ||||| || | Sbjct 38013 TATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGC 38072 Query 161765 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 161824 |||| |||||| | ||| | ||| |||| ||| | ||| |||| | || || |||| Sbjct 38073 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACG 38132 Query 161825 GGGCTTTCGCTCTGATTGGATTCATGCTT-CGTCAGTTTGAACTTGCTCGTCTTATCGGT 161883 | || || | | | ||||||||| || || ||||| || || | ||||||||| | ||| Sbjct 38133 GTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGT 38191 Query 161884 ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTT 161943 || ||||| ||||| || ||||| |||||||| |||||||| || ||||| || || Sbjct 38192 ATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTC 38251 Query 161944 CTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCT 162003 | || |||||||| ||||| | ||||||||||| ||| ||||||||||| ||| Sbjct 38252 TTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCT 38311 Query 162004 ATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCAC 162063 |||||| | || ||| | ||| ||||||||||||| || ||||| |||||||| ||||| Sbjct 38312 ATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAT 38371 Query 162064 ATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACT 162123 ||||||||||| ||||| || || || ||||| || | ||||| ||||| || | || Sbjct 38372 ATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACA 38431 Query 162124 GTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCT 162183 || ||||| || || | |||||||||| ||||| || ||| || ||| | Sbjct 38432 GTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCA 38491 Query 162184 ACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTC 162243 || ||| || || ||||| |||||||| || ||||| | |||||||| || || || Sbjct 38492 ACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTT 38551 Query 162244 GGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATG 162303 ||| | ||||| || || |||||| | |||||||| ||| | || ||||| || | Sbjct 38552 GGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACA 38611 Query 162304 GGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGAC 162363 ||| | |||||||||||| | |||||| |||| | || | ||| | | || ||||| Sbjct 38612 GGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGAT 38671 Query 162364 TTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAG 162423 || |||||||| ||| ||||||| || || ||||| ||||||||||| |||||||| || Sbjct 38672 TTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 38731 Query 162424 AATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAG 162483 |||||| | || ||||||||| || | | ||| |||| || || ||||| ||||| Sbjct 38732 AATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAA 38791 Query 162484 AACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACT 162527 || ||||||||||| ||||| ||| | || | || ||||| || Sbjct 38792 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38835 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 160954 TGTGAGGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTAC 161013 ||||| ||||| |||| | | ||||||||||| ||| || |||| ||| || Sbjct 18860 TGTGATGATGACGAATACATTTTAGACGCTGCTGAAGAAAATGGATTTGAACTACCTTAT 18919 Query 161014 TCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGAT 161073 || || | | ||| |||| || ||||||||||| ||| |||||||| | ||| Sbjct 18920 TCTTGCAGATCAGGTTCTTGTTCAACTTGTGCTGGCCGAGTTGTTGGTGGTACTATTGAT 18979 Query 161074 CAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGC 161133 |||||||| ||||| || | || ||||||||| ||| | ||||| || | || ||| Sbjct 18980 CAATCTGAGCAATCCTTTTTAGAAGATGATCAAGTTGCAGAGGGATTCGTATTAACTTGC 19039 Query 161134 GTTGCTTATCCCACTTCTGAT 161154 || || ||||| | |||||| Sbjct 19040 GTAGCATATCCTGCATCTGAT 19060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551335673737800