Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq5733 700 0.0 seq225 547 8e-151 >seq5733 Length=57551 Score = 700 bits (776), Expect = 0.0 Identities = 733/957 (77%), Gaps = 12/957 (1%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACC 188937 |||||| | || |||||||||||||||| | |||||||| || | | | || || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 188938 ATCTGCTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAA 188997 | |||||||||| |||| || |||| ||||| || ||||| || ||||| ||||| ||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 188998 CCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCA 189057 || || ||||| ||||| | || ||||||||||| ||| | ||||| ||| | ||| Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 189058 TCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGG 189117 || ||||| |||||| ||||||||||||| | |||||||| || || | || |||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 189118 CTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC- 189176 || |||||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGG--TGTA-GCT 41533 Query 189177 --CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC 189234 ||||||||| ||||| |||||||| |||||| | || |||||||||||||| | | Sbjct 41532 TGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 41473 Query 189235 ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGT 189294 | |||| ||| || || || || |||||||| ||||| || | || || || |||| Sbjct 41472 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGA 41413 Query 189295 CAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTT 189354 |||||| |||||||| | ||||| || ||||| ||| || ||||||| |||| | Sbjct 41412 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTA 41353 Query 189355 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGT 189414 || ||||||||||| |||||||| || |||||||| ||||| ||| || || || ||| Sbjct 41352 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 41293 Query 189415 GTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTT 189474 || || ||||| || | ||| || ||||| ||||| || || || ||| | | Sbjct 41292 GTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATC 41233 Query 189475 CGTGAAACCACTGAA-ACCGAGTCCCAG--AACTATGGTTACAAGTTTGGACAAGAAGAA 189531 |||||||| |||| || | || | | ||||| |||||||| || |||||||||||| Sbjct 41232 CGTGAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAA 41176 Query 189532 GAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCA 189591 ||||| ||||||||||| ||||| || || || || || ||| | ||||||||||| || Sbjct 41175 GAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCG 41116 Query 189592 TCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATC 189651 ||||||||||| ||| | | ||||||||| | ||||| |||||||| || |||||| Sbjct 41115 AGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATC 41056 Query 189652 TGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAAT 189711 ||||| || || || || || || || |||||||| ||| | || || ||||||||||| Sbjct 41055 TGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAAC 40996 Query 189712 CAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGT 189771 ||||| || ||||| ||||||||||||| | ||||| ||||| ||| || |||||||| Sbjct 40995 CAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGT 40936 Query 189772 GCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGAT 189828 |||| | | ||||||||||| ||||| || |||||||| |||||||||||||| ||| Sbjct 40935 GCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 40879 >seq225 Length=49998 Score = 547 bits (606), Expect = 8e-151 Identities = 737/1021 (72%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 |||||| | | ||||||||| | ||||||||||| || || ||| | |||||||| || Sbjct 37823 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGC 37882 Query 190047 TTACTTCTTTTTCCC-ACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTT 190105 | || || ||||| || || | ||| ||| ||||||| ||| | || || ||||| || Sbjct 37883 CT-TTTATTATTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTT 37941 Query 190106 TGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCT 190165 || |||| ||||| || || ||| | ||| | ||| | || || ||| || | Sbjct 37942 TGTTACATCTTGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTT 38001 Query 190166 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 190225 || | || || ||||| || || | ||||||||| || | || || | ||||| Sbjct 38002 AACTGTAGCAGTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGG 38061 Query 190226 TCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGT 190285 |||||| | ||||| |||||| | ||| | ||| |||| ||| | ||||||||| | Sbjct 38062 ACCTGAAGCGCAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTAT 38121 Query 190286 GGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTT-CGTCAGTTTGAACTGGCAC 190344 || || ||||| || || | | ||||||||||| || || ||||| || || | || | Sbjct 38122 AGCACTACACGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTC 38180 Query 190345 GTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTG 190404 |||| | ||||| ||||| ||||| || ||||| |||||||| ||||| || || |||| Sbjct 38181 GTCTTGTAGGTATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTG 38240 Query 190405 TTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCG 190464 || || || | || || ||||| || ||| | |||||||||||||| ||| || | Sbjct 38241 TTTCTGTATTCTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTG 38300 Query 190465 GTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGA 190524 | || ||||| || ||||| || | | ||||| || || |||||||||||||| || | Sbjct 38301 GGGTTGCAGCTATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTA 38360 Query 190525 ACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCC 190584 | || ||||| ||||||||||| ||||| || | ||||| ||| || | || ||||| | Sbjct 38361 ATCCATTCCATATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTC 38420 Query 190585 ATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAG 190644 |||| | || ||||| ||||| | | |||||||||||| |||||||| || | Sbjct 38421 ATGGAGCCACAGTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTG 38480 Query 190645 CATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGT 190704 | || | |||||| ||||| || ||||||||||| || || || | ||||||| Sbjct 38481 CGTTTACACCAACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGT 38540 Query 190705 CTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 190764 ||||||| |||||||| || ||| || || | ||| | |||||||| ||| | |||| Sbjct 38541 CTCAAATTTTTGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTG 38600 Query 190765 TTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 190824 ||||||| | ||| | ||||| ||| | |||||| ||||| | || | || | Sbjct 38601 TTCCTGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAA 38660 Query 190825 GTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTT 190884 | || || || || ||||| |||||| | | || || ||||||||||| || || |||| Sbjct 38661 GAGCATACGATTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTT 38720 Query 190885 TTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATC 190944 | ||||| |||||||| | || ||||||||| || | || ||| |||| | || | Sbjct 38721 TCTACACTAAAAATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACC 38780 Query 190945 AACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGAT 191004 |||| ||||| ||||||||||| ||||| || || || ||| | || ||||| || | || Sbjct 38781 AACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 38840 Query 191005 A 191005 | Sbjct 38841 A 38841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634033624974000