Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq5733 737 0.0 seq225 553 2e-152 >seq5733 Length=57551 Score = 737 bits (816), Expect = 0.0 Identities = 790/1039 (76%), Gaps = 8/1039 (1%) Strand=Plus/Minus Query 160563 TGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTC 160622 ||||| | |||||| ||| | ||| ||| | || ||| | ||| ||||||||||| Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806 Query 160623 GGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTT 160682 ||||| | ||||||||||| | || |||| || |||||| || | || ||| | Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746 Query 160683 GCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTAT 160742 || || || || || || ||||| |||||||||||||| || ||||| ||||| | || Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686 Query 160743 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTC 160802 ||||||||||| ||| | ||||||||| ||||| ||| ||||| |||||| |||||||| Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626 Query 160803 TACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAA 160862 ||||| ||||||||||||| ||| | || || ||||| ||||| ||||||||||||||| Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566 Query 160863 CTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTT 160922 || || ||||| |||||| | | || | ||||||||||| || || ||||||||| Sbjct 41565 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 41506 Query 160923 TCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCT 160982 |||||| | || ||||| || ||||| | ||| || | || || || || ||||| Sbjct 41505 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 41446 Query 160983 GCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCC 161042 || |||||||||| | || || || | || |||||| ||||||||||||||||| Sbjct 41445 GCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCT 41386 Query 161043 CTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTG 161102 | ||||| |||||||| |||||||||||| | || ||||| |||||||||||||| || Sbjct 41385 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 41326 Query 161103 ATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCA 161162 |||||||| ||||| ||| |||||||||||||| || ||||| ||| | ||| || Sbjct 41325 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCT 41266 Query 161163 ATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTG-AGAACGAGTCCCA 161221 ||||| ||||| || || || ||| | | |||||| |||| ||| | || | Sbjct 41265 ATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAA---ACTGAAGACGGCGTATCT 41209 Query 161222 G--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCAT 161279 | ||||| |||||||| || || ||||||||||| || ||||||||||| ||||| || Sbjct 41208 GCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 41149 Query 161280 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCAC 161339 |||||||| || || | |||||||||||||| ||||||||||| ||| | || ||| Sbjct 41148 GGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACAC 41089 Query 161340 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACC 161399 |||||| | || |||||||| ||||| ||||||||||| ||||| |||||||| || Sbjct 41088 TTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACT 41029 Query 161400 ATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAA 161459 |||||||| ||| | ||||| |||||||||||||| || | | ||| |||| || Sbjct 41028 ATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGT 40969 Query 161460 GTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCAC 161519 || | ||||| ||||||||| || | || |||||| | | |||||||||||||||||| Sbjct 40968 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 40909 Query 161520 GAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA-GTCCACTCCTGTTGC 161578 || ||||| || |||||||||||||| ||| | || | || | || | ||| ||||| Sbjct 40908 GAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATGTTC-TTCCAGTTGC 40850 Query 161579 ACTGACCGCACCTACTGTT 161597 | | | ||| ||| ||||| Sbjct 40849 ATTAAACGCTCCTGCTGTT 40831 >seq225 Length=49998 Score = 553 bits (612), Expect = 2e-152 Identities = 730/1007 (72%), Gaps = 4/1007 (0%) Strand=Plus/Plus Query 163899 GACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 163958 || |||||| | ||||||||||| || || ||| | |||||||| || | || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCT-TTTATTATT 37893 Query 163959 CCC-ACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTG 164017 ||| || || | ||||||| ||||||| ||| | || ||||| || |||||||| ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 164018 GTACACCCACGGTCTCGCGTCTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGT 164077 ||| || || || | || ||| ||| | || || ||| ||| | || | || || Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 164078 GTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164137 ||||| || || | ||||||||| || | || || | ||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 164138 GGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGG 164197 || || |||| | | ||| ||| |||| ||| | ||||||||| | || | ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 164198 ATCTTTCGCTCTGATCGGTTTCATGCTT-CGGCAGTTTGAAATTGCACGTCTTGTAGGTA 164256 | || | | | || || ||| || || || || || || || || ||||||||||||| Sbjct 38134 TGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 38192 Query 164257 TCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCC 164316 | ||||| ||||| || ||||| |||||||| || ||||| || ||||| || ||| Sbjct 38193 TTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCT 38252 Query 164317 TTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGA 164376 | || || ||||| || ||| | ||||||||||| || || |||||||| || || | Sbjct 38253 TAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 38312 Query 164377 TCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATA 164436 | ||| |||| | || ||| | ||||||||||||||||||||||| || || ||||||| Sbjct 38313 TTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATA 38372 Query 164437 TGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCG 164496 |||||||||| ||||| || | || ||||| | | | ||| |||||||| || || | Sbjct 38373 TGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAG 38432 Query 164497 TAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTA 164556 |||| ||||| | |||||||||||||| |||| || ||| || || || | Sbjct 38433 TAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAA 38492 Query 164557 CTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTG 164616 | ||| ||||| ||||| |||||||| || || || | ||||||||||| ||||||| Sbjct 38493 CACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTG 38552 Query 164617 GTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGG 164676 || | |||||| || || |||||| | || ||||| ||| | ||||||||||| | | Sbjct 38553 GTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAG 38612 Query 164677 GACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATT 164736 | | |||||||||||| ||||||| | ||| | ||| | ||| | | || || |||| Sbjct 38613 GTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATT 38672 Query 164737 TTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGA 164796 | || ||||| ||| || | || || || ||||| |||||||| || ||||| || || | Sbjct 38673 TCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAA 38732 Query 164797 ACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAAT 164856 | ||| | | |||||||| | | | ||||||||| || |||||| ||||| ||| Sbjct 38733 ATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAA 38792 Query 164857 CGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 |||||||| |||||||| ||| | || | || ||||| || ||| Sbjct 38793 ATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 38839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559287092148400