Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1630 167 6e-39 >seq1630 Length=32053 Score = 167 bits (184), Expect = 6e-39 Identities = 249/347 (72%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGG 58 ||||| | | |||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 11780 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 11722 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || ||| |||| ||| || | | ||||||||| || ||||||||||| |||||| | Sbjct 11721 GCGAGCATTATTCGGGATGATTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGTTGAAA 11662 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG- 177 | | | || ||| ||| | | ||| |||||| || |||| | Sbjct 11661 GAAACAAATTAAAGCTTAACTTTATAAATTTTTTCAAAACTGATAAACTTGAGTATAAAT 11602 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || | ||||||| ||| || || | | |||| ||| |||| ||| ||||| ||| Sbjct 11601 AGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGACCTA 11542 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 |||||||||| | |||| | || |||||||||||| ||||||| |||| ||| | Sbjct 11541 TGGCGAAGGCAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGA 11483 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 || |||||||| |||| ||||||||| || ||||||||||| | ||| Sbjct 11482 ACGGGATTAGAGACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 11436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203151138048