Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3725 201 9e-47 seq963 192 5e-44 >seq3725 Length=16789 Score = 201 bits (222), Expect = 9e-47 Identities = 736/1141 (65%), Gaps = 35/1141 (3%) Strand=Plus/Minus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 |||||| || | || ||||| ||| || ||||| |||||| || || | ||| || Sbjct 3167 GAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTC 3108 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 |||| || || || || ||||| || ||||| ||||| ||||| || | ||| ||||| Sbjct 3107 GTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCATAGGAGCCACTAGCAAAGAGTT 3048 Query 65554 TCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACAT--CGGTTTA 65611 || | |||| | | | ||| | ||| || ||||| ||| | | | | Sbjct 3047 GCGGATGCCGTGCTTAATCACGTTCTCCTTCAAGGCGGTCCAGTCCCAAAGACCAGAGGA 2988 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 || | | ||| |||||| || || | | | || | |||||||| || || Sbjct 2987 -CGGGGTGA--CACC--CCACATGTCGAACTGGAAGATACCCTTGCTGGCCGGGGAGCCC 2933 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731 | || | |||||| ||| || ||||||| | | ||||| | | ||| Sbjct 2932 TGAAATGTCTCGTACGGGCCCAGTTCTTTGGCAATCTCCATGGATGTCTCCATCGAAGCA 2873 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791 |||| |||||||| ||||| || |||||||| |||| ||||| ||| ||| | Sbjct 2872 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACG-C 2814 Query 65792 ATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 ||| ||| || | |||| ||||||||||| ||||| ||||| || | || || || Sbjct 2813 ATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTG 2754 Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 |||| ||||| || ||||| | || |||||||| |||| || |||| || Sbjct 2753 GCGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTT 2694 Query 65911 CAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGG 65970 | || || || ||||| | | ||| || || | || | || | Sbjct 2693 AAGGTTACGGGTGACCACCTTC-------GTCACA-----TCATA--CAGCTTCTTGTAG 2648 Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 ||| || ||| | |||||||||| || | || | ||| || | |||||| || Sbjct 2647 TCGAA---GACA-CCGTCCTCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACAC 2592 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 || | ||| || || | |||||||| | | || ||||| |||||| | || || Sbjct 2591 GGCCACCTCATCCGGCGACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGAT 2532 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 ||||| | |||||| || || ||| || ||| ||| ||||| | | ||| | || Sbjct 2531 CGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGG 2472 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 ||| ||||||| || | || | ||| | ||| || | || || | || Sbjct 2471 CACGCCCGTCTCAATCTGCGCATCTAAAATGCTGAACCATAGCTGCTGCGCATTAATTGT 2412 Query 66211 A---CGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCAC 66266 || | || || ||||| ||||| | ||| || || ||||| || | Sbjct 2411 CTTGCGAGCGCGTCCCTCCTTT----TCGTACTTTTCATAAAGCGTCTCGAACTCGTCTC 2356 Query 66267 CCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCT 66326 |||| ||| | ||| ||| | || ||||| | | ||| | |||| Sbjct 2355 CCCAGCACTCGTAGAGAGCAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAG 2296 Query 66327 GTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTC 66386 ||| || || |||||| |||||||| ||||| || |||||||| | || || |||| Sbjct 2295 CTTCCACCCGTTTCATAAACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTC 2236 Query 66387 GTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 | ||| ||| | ||||| ||||| |||| ||| || |||||||| | ||||||||||| Sbjct 2235 GGTGCAATTCATTACCGTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCC 2176 Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 | || |||| ||| || || || || || | |||||||| ||||||||||| ||||| | Sbjct 2175 ACGGCTCCAAGTATATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATC 2116 Query 66507 GAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566 | || | ||| || || || ||||| || | || ||||||||| ||||| |||| Sbjct 2115 GGGCCGTGTCGTTAAACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGC 2056 Query 66567 C 66567 | Sbjct 2055 C 2055 >seq963 Length=117303 Score = 192 bits (212), Expect = 5e-44 Identities = 569/860 (66%), Gaps = 43/860 (5%) Strand=Plus/Plus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| || || || ||||| |||||||| | || ||| |||| ||| Sbjct 40848 TGGCAAATGTACAAGAAAGCCGAGGCTTCGTTCTGGACAGCCGAAGAGCTCGACTTGGTG 40907 Query 61150 AAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGT 61208 | || | || || ||| | | ||| || | ||||| ||||| ||||| ||||| Sbjct 40908 CATGATCTCAAGGATTGGAAAACACTTACGGA-CAATGAACGTCATTTTATTAAGCATGT 40966 Query 61209 GTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTT 61264 | | || || ||||| || || || || || ||||||||| | || |||| || Sbjct 40967 GCTTGCCTTTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCAT--GAAC-TT 41023 Query 61265 TCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGG 61324 | || | || |||||||| | || || || || || ||||| || || ||||| || | Sbjct 41024 TAGCA-ATGAAGTGCAAGTACCTGAAGCTCGCTGCTTTTACGGTTTTCAAATTGCTATCG 41082 Query 61325 AGAATGTCCACTCGGAGATGTA--CAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||||| | ||||||||| | || || || || || ||||| || || | | | || Sbjct 41083 AGAATATTCACTCGGAGGTCTATTCACTG--CTTATTGATACATATATTAAGAAT---GC 41137 Query 61383 GGAACGTGAACGATTGT----TCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAG 61438 | | | ||| ||| | | ||| || || ||||| || || ||| ||||| Sbjct 41138 TGTA-GAGAAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAG 41196 Query 61439 CGGATTGGGCCTTCAATTGGAT---CACCAGTA---CAACGGCTACATTTGGTGAACGAT 61492 | ||||||| |||| ||| | || || || || ||| | ||||| Sbjct 41197 CCAATTGGGCACTCAAGTGGTGTGACCCCCGTGTGTCATCG--TAC----GCGGAACGTC 41250 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 | |||| ||||| ||| || || | || ||| ||| || || | | ||||||| Sbjct 41251 TATTGGCGTTTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTT 41310 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||||||||| || ||||| ||||| | |||| || ||| | || || | Sbjct 41311 GGCTCAAGAAACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTG 41370 Query 61613 ACGAGGGCATGCATTGTGATTTTGCT-GTTT--TGCTATTCAAACGCTATCTGGTGAATC 61669 | || || ||||| || |||||| || | || || || || ||||| || Sbjct 41371 ATGAAGGTATGCACACGGACTTTGCTTGTCTCATG-TACTCGAAA-----CTGGTTAACA 41424 Query 61670 GTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAAT 61729 | | | | |||||| |||||| ||||||| || || || || || || || | Sbjct 41425 AATTGCCAGCGAGTCGTGTGCACGAGATTATTCGTGATGCTGTGACAATTGAGCACGAGT 41484 Query 61730 TTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 || || |||| | | || ||| ||||| |||||||| | | ||| |||| |||| Sbjct 41485 TTGTGCGTGACTCGCTCCCTGTCGAGCTCATTGGCATGAACTCGGCACTCATGTGTCAGT 41544 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATA 61849 | ||||| || || || ||||||||| | | ||||| | ||| ||| || Sbjct 41545 ACATTGAGTTCGTGGCTGACCGTCTGCTATACTCACTGGGTGTTGCCAAGATTTATCATG 41604 Query 61850 CGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG 61909 | || || ||||| || | ||||| ||||| ||||| | |||||||| || ||||||| Sbjct 41605 CCAAGAATCCATTCGACTGGATGGATATGATCTCGCTACAAGGCAAGACCAACTTTTTCG 41664 Query 61910 AGAAACGTGTAGGCGACTAT 61929 |||||||||| ||||| ||| Sbjct 41665 AGAAACGTGTGGGCGAGTAT 41684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397548322993040