Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1078 111 4e-22 >seq1078 Length=24344 Score = 111 bits (122), Expect = 4e-22 Identities = 232/340 (68%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 20272 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 20330 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGAC--AG 118 || ||| ||| |||| || | | ||||||||| || | ||| |||| | |||| | Sbjct 20331 GCGAGCATTATTCGGGATGATTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGTTGAAA 20390 Query 119 GTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGT 178 | |||| | |||||| | || | || |||| ||| |||| | Sbjct 20391 GAAACAAATTAAAG--CTTAACTTTATAAATTTTTTCAAAACTGATAAACTTGAGTATAA 20448 Query 179 C-AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACC 237 ||||| ||||||| | || || | |||| ||| |||| | ||||| ||| Sbjct 20449 ATAGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGACC 20508 Query 238 AATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCA 297 |||||||||||| ||||| | |||||| || | |||||||| |||| ||| Sbjct 20509 TATGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGTAGCG 20568 Query 298 AACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| |||||||| |||| ||||||||| || |||||||| Sbjct 20569 AACGGGATTAGAGACCCCGGTAGTCCATGCTGTAAACGAT 20608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289543425248