Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1078 102 1e-19 >seq1078 Length=24344 Score = 102 bits (112), Expect = 1e-19 Identities = 172/247 (70%), Gaps = 18/247 (7%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||||| ||||| ||||||||||| ||||| || |||||||| ||||| | || ||| Sbjct 16984 TTATC-TTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGA 16927 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||| ||||||| ||||||||||| ||| ||||| | || || || | Sbjct 16926 GTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTG---------ACACCTAA- 16877 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | || | | | || || || |||||||||||| | ||||||||||| | Sbjct 16876 ----TTTTTTAAAATTA--GGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGT 16823 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | | ||||| | | | ||||||| | ||| |||| |||||||||||||| Sbjct 16822 TCCTTCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATTCACCTGTGTCGGTT 16763 Query 242 TACGGTA 248 || |||| Sbjct 16762 TAGGGTA 16756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694370488651