Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1078 235 2e-59 >seq1078 Length=24344 Score = 235 bits (260), Expect = 2e-59 Identities = 357/503 (71%), Gaps = 35/503 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 || || |||||| |||||| ||||||||||||||||| | ||||||||||||||||| Sbjct 20672 TATGATCGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCAT 20731 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||| ||||||||||||| ||||| || | | Sbjct 20732 GTGGTTTAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TT 20780 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | | ||| | ||| | | | ||||| | ||||||| ||||||||| Sbjct 20781 TTTATATAAAATTTTATAT--------AAAAA---ACAGGCGTTGCATGGCTGTCGTCAG 20829 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||| |||| ||||| |||||| ||| |||||||||||||| || |||||||| Sbjct 20830 CTCGTGTTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATCGTTAGTTGC 20889 Query 241 CATC--ATTA------AGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAG 292 || |||| | | ||| ||| | ||| | ||||| Sbjct 20890 TATTTTATTATAAAAAATAAAAGTACTTTAACGAAAAAATTAATGATAGGTTAATGGAAG 20949 Query 293 GTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352 ||||||| |||||||| || ||||| ||||||||| ||||||||||||||||||||||| Sbjct 20950 GTGGGGATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT- 21008 Query 353 GACAAT-ACAAAGGGCAGCGAAACCG--CGAGGTCAAGCAAATCCCATAAAGTTGTTCTC 409 || ||| |||| | | || | | | || | ||||||| | |||| | ||| Sbjct 21009 GATAATCACAATGAGAGGCAATAATGTTTAAGTTGGAGCAAAT-CTTTAAAAATTATCTT 21067 Query 410 AGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGAT 469 |||||||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| Sbjct 21068 AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAA 21127 Query 470 CAGCATGCTACGGTGAATACGTT 492 ||||||| | ||||||||| ||| Sbjct 21128 CAGCATGTTGCGGTGAATATGTT 21150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503934019520