Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1078 113 2e-22 >seq1078 Length=24344 Score = 113 bits (124), Expect = 2e-22 Identities = 177/252 (70%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || ||| ||||| || | |||||||| || |||||||||| Sbjct 16206 ATTCGGAGTTTCCAAGAGTTCAGTAAGTTTTTACACCCCCTAGCTCAATGAGTGCTCTAC 16147 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 16146 C-CCAAAAAAAGTTTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 16088 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| || || || | ||| | || || || Sbjct 16087 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCGTCTCCATATTTTGCCACATATGT 16028 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| |||| || || ||||| ||||| ||| ||||| ||||||||| Sbjct 16027 GAGTTCGATCCTTCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 15968 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 15967 GTTTCGGGTCTT 15956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817520261888