Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1078 134 3e-29 >seq1078 Length=24344 Score = 134 bits (148), Expect = 3e-29 Identities = 149/192 (78%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||||||| ||| ||||| |||| Sbjct 16447 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCGGAAGAACTAGACCAATGAG 16388 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | | Sbjct 16387 CTATTACGCGTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGT-AATGATT 16329 Query 332 C-TCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCT 388 | | ||| |||||| |||| || | | |||| | ||||||| ||| ||||||||| Sbjct 16328 CTTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCT 16270 Query 389 GTTTCCCTCTCG 400 |||||||| ||| Sbjct 16269 GTTTCCCTTTCG 16258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177548338688