Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1078 232 2e-58 >seq1078 Length=24344 Score = 232 bits (256), Expect = 2e-58 Identities = 258/337 (77%), Gaps = 7/337 (2%) Strand=Plus/Plus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | ||||||||| ||| | ||||||| | | ||| |||| || ||| | Sbjct 20052 GATTATGGTAGTTGGTAGTTTAAAAGACTACCAAGCCTATTATCTTTAGCTGATTTGAAA 20111 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| Sbjct 20112 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGG 20170 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-C 344 ||||| ||| |||||| || ||||| |||| |||||| ||| ||||| |||| |||| Sbjct 20171 GGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGATGGAGGCTA 20230 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | ||| |||||||||| || | ||||| || |||||| |||||| | | |||| || Sbjct 20231 ATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAAGTTCC 20290 Query 405 GGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||| || |||||||||||||||||||||||| || || ||| |||| ||| || Sbjct 20291 GGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGGATG 20349 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | ||||||||| || ||||||||||| |||||| Sbjct 20350 A-TTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGT 20385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497534300288