Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1078 140 1e-30 >seq1078 Length=24344 Score = 140 bits (154), Expect = 1e-30 Identities = 305/449 (68%), Gaps = 7/449 (2%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || || | Sbjct 15957 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGAA 16016 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || || || ||||| |||| |||||||||| Sbjct 16017 GGATCGAACTCACATATGTGGCAAAATATGGAGACGATTTGTGGTTAGGAGTGAAAGGCT 16076 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | | | Sbjct 16077 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAAAC 16136 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | |||||||||| | |||||| ||| ||| Sbjct 16137 TTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGGT-GTAAAAACTTACTGAACTCTTGG 16195 Query 274 AAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTG 333 ||||||||||| | | | | | | || || | || ||||||||| | Sbjct 16196 AAACTCCGAATACAAAAAAATGTAATTTAAATAGACAGACATTAGGCGCTAAGGTCTTTT 16255 Query 334 CCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAGTTAA 391 ||| ||| || | || || | ||| ||||||| | | |||| | | |||||| || Sbjct 16256 GTCGAAAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAGTGAA 16314 Query 392 ACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTT 451 | || ||||| | | ||| | || | || |||||||||||||||| || ||| Sbjct 16315 A--AAGGAAGTGAAAGAATCATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TCCTTT 16371 Query 452 AAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| |||||| |||||| | ||| || Sbjct 16372 AAAGAACGCGTAATAGCTCATTGGTCTAG 16400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689525877248