Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1078 77.0 7e-12 >seq1078 Length=24344 Score = 77.0 bits (84), Expect = 7e-12 Identities = 147/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 67 TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTG 126 |||| ||| | || ||||| ||||||| | | ||| |||| |||| | | Sbjct 20265 TTTTCCTCCTTAATGAAAGAGCTTTACAACCTAATTAGCCTCCATCACTCACTCGGTATT 20206 Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| ||| || ||| ||||| |||| ||||| ||||||||||| | ||||| Sbjct 20205 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTT 20147 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 || |||||||||||| ||||||||| || | | || ||| | | ||| || |||| Sbjct 20146 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAATCAGCTAAAGATAATAGG 20087 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACC-TAAT 279 || ||| | | ||| | || |||||| |||| Sbjct 20086 CTTGGTAGTCTTTTAAACTACCAACTACCATAAT 20053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068753111744