Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4219 399 7e-109 >seq4219 Length=2042 Score = 399 bits (442), Expect = 7e-109 Identities = 422/558 (76%), Gaps = 62/558 (11%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 699 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 757 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| || || |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 758 TCCCTGTATCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 817 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 818 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 877 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||| |||| |||||||||||||| | | || ||||| || Sbjct 878 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATCGC--GC 935 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA----AGGAGCCCCGAAGGGCG 295 || ||||| || ||||||||||| ||| || | || | | || Sbjct 936 AATAG----CGCGATCCGCACAGTTATTATGATTCAACACAATACCAGTCTATGACTGCA 991 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCCG--AAG---------------------- 331 |||| ||| ||||||||||| | |||| ||| ||| Sbjct 992 TTGG-TTTCAATCTAATAAATGCTACCCTCCCGACAAGCATCATGAAGATGATCCAAAAT 1050 Query 332 -TCG----------------------GGGTTTTTA-GCATGTATTAGCTCTAGAATTACC 367 ||| ||| | || ||||||||||||||||||||||| Sbjct 1051 CTCGAACCAACTCTAGACAAGCGGTTAGGTATGTATGCATGTATTAGCTCTAGAATTACT 1110 Query 368 ACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 ||||||||||| |||||||||||||||| | || || ||||||||| ||||||||||||| Sbjct 1111 ACGGTTATCCAAGTAGTAAGGTACTATCGAGTAGACTATAACTGATATAATGAGCCATTC 1170 Query 428 GCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 |||||||||| ||| | | || ||||||||||||||||||||||||||||||||||||| Sbjct 1171 GCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 1230 Query 487 GCATATGACTACTGGCAG 504 || ||||||||||||||| Sbjct 1231 GCGTATGACTACTGGCAG 1248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510333738752