Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3916 235 2e-59 >seq3916 Length=40521 Score = 235 bits (260), Expect = 2e-59 Identities = 357/503 (71%), Gaps = 35/503 (7%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 || || |||||| |||||| ||||||||||||||||| | ||||||||||||||||| Sbjct 19849 TATGATCGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCAT 19790 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||| ||||||||||||| ||||| || | | Sbjct 19789 GTGGTTTAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TT 19741 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | | ||| | ||| | | | ||||| | ||||||| ||||||||| Sbjct 19740 TTTATATAAAATTTTATAT--------AAAAA---ACAGGCGTTGCATGGCTGTCGTCAG 19692 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||| |||| ||||| |||||| ||| |||||||||||||| || |||||||| Sbjct 19691 CTCGTGTTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATCGTTAGTTGC 19632 Query 241 CATC--ATTA------AGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAG 292 || |||| | | ||| ||| | ||| | ||||| Sbjct 19631 TATTTTATTATAAAAAATAAAAGTACTTTAACGAAAAAATTAATGATAGGTTAATGGAAG 19572 Query 293 GTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352 ||||||| |||||||| || ||||| ||||||||| ||||||||||||||||||||||| Sbjct 19571 GTGGGGATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT- 19513 Query 353 GACAAT-ACAAAGGGCAGCGAAACCG--CGAGGTCAAGCAAATCCCATAAAGTTGTTCTC 409 || ||| |||| | | || | | | || | ||||||| | |||| | ||| Sbjct 19512 GATAATCACAATGAGAGGCAATAATGTTTAAGTTGGAGCAAAT-CTTTAAAAATTATCTT 19454 Query 410 AGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGAT 469 |||||||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| Sbjct 19453 AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAA 19394 Query 470 CAGCATGCTACGGTGAATACGTT 492 ||||||| | ||||||||| ||| Sbjct 19393 CAGCATGTTGCGGTGAATATGTT 19371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503939539200