Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3916 118 2e-24 >seq3916 Length=40521 Score = 118 bits (130), Expect = 2e-24 Identities = 149/197 (76%), Gaps = 7/197 (4%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| | | | | || |||| ||| ||| |||| |||||||| |||||||| | Sbjct 20277 CTTTACAACCTAATTAGCCTCCATCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTC 20335 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| ||||||||||||||||| | ||| ||| |||||||||||| ||| Sbjct 20336 ATTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAA 20394 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCT 178 |||| |||||||| || ||| | ||| || ||| | | |||||| || | || | || Sbjct 20395 TGTGGCTGATCATTCTTTCAAATCAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT 20453 Query 179 CACCAACTAGC-TAATC 194 |||||||| | ||||| Sbjct 20454 -ACCAACTACCATAATC 20469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071956905600