Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq3916 113 2e-22 >seq3916 Length=40521 Score = 113 bits (124), Expect = 2e-22 Identities = 177/252 (70%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || ||| ||||| || | |||||||| || |||||||||| Sbjct 24315 ATTCGGAGTTTCCAAGAGTTCAGTAAGTTTTTACACCCCCTAGCTCAATGAGTGCTCTAC 24374 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 24375 C-CCAAAAAAAGTTTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 24433 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| || || || | ||| | || || || Sbjct 24434 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCGTCTCCATATTTTGCCACATATGT 24493 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| |||| || || ||||| ||||| ||| ||||| ||||||||| Sbjct 24494 GAGTTCGATCCTTCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 24553 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 24554 GTTTCGGGTCTT 24565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817526932480